Protein

View in Explore
Genbank accession
BDR25073.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MASAFEDYVNGELPKRVSSIDEPTSVVNGHIPVSTGVGLNTTFVDPVTIPGLKGEDGAPGKDGEQGPPGPVGPAINIIANVDLATFEQDIKPLDTHNVGDAWFVEDRLWVWESPLGNEDPPVKGRWVETGSLRGPDGTGLVIRGRWPNNLELPKTESNKPGDAYSWNNQLWAWMLISGNNPPENPTIDDYDWFPVTPQGERGPEGPEGPKGEDGDIGPEGPQGEPAMPFTIKDSLPSPADLPDPSVAKESEAYLVTMEAGKPGHLFIFVKGAWSDLGTFQGPEGPQGKPGNTGDPGPDGKQGEPGPQGRNLEVVKAVETADDLLTTTGVEQYQGVSVRSTNTVYVLTGQDPTVDISWTAMGSFRGPQGPEGPKGEDGDQGLPGEPGAQGKSAFQVALDNGFTGTEGEWLISLHGKNVVITGAVANEAALPADAPDQAAYFTQDTSTLFVKIDGNWVNSGTHRGPKGEEGPEGPQGPDGKQGEPGPVGEPIQIIAAIDTTEDTPPTATTENQWKAYAVKSTGEVFVNMDGSSWTSIGIMAGPQGKPGEGLNIKGVLTDVSQLPKKDTNPELTTGDSYWVETDNGPMLYTYQGQEIDGYIGPIDLNGEQGIQGVEGPQGPEGKQGGGLLIIYVGDDAGKPAASADNVGKGIAIHTNTEGQVEVFVCIDTEGTFTWESLGVLAMGPEGPQGPEGKQGVPGIPGKTGQKGERGSSWVILPEGQTAPTSIDGNRGDWCIDKTGTVWYKDANWVVFYKLMSVPVSEVDPEDVDKKMVRYKLGWTELPVDEVPNAEVGVFYGRHKATADGAIEWTAIELPTPAIDAVPNPTVNAQYVRKGIAGGKTEWATITFPEIPSDVVRDTAQATKPQGRVAGNWVDVAPLQTDDTLMGMQNGEWVAVPAAVIGEVPSEGANGTNYVREKTASGSKWTPVTIIVDQADATSGQLFLRNAAAKSWTLFQGPNNDVTADGDWVRSRTGTNITWKKLDKSFDVYSLKSSTFTGTALTLTPANQQCYRVQTAANQTITLENGPVDRMVTAVLVLLGKVAMPTLSSAVLQWNNGTPLIVDDLGDTKTILTLLWDGTNWVVSKGAVI
Physico‐chemical
properties
protein length:1087 AA
molecular weight: 115103,38330 Da
isoelectric point:4,37987
aromaticity:0,07176
hydropathy:-0,42971

Domains

Domains [InterPro]
DC_0272
ATT
1–50
DC_0272 IPR050149 DC_1062
G3DSA:1.20.5.320
STR
49–93
G3DSA:1.20.5.320 DC_1340 DC_1725 DC_0309
G3DSA:1.20.5.320
STR
281–335
G3DSA:1.20.5.320 G3DSA:1.20.5.320 G3DSA:1.20.5.320 DC_1340 G3DSA:1.20.5.320
BDR25073.1
1 1087
Architecture
ATT
STR
STR
STR
RBD
ATT 1-50 | STR 51-93 | STR 177-596 | STR 629-894 | RBD 916-1084 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage sp. Brmt
[NCBI] 		2972140 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDR25073.1 [NCBI]
Genbank nucleotide accession
LC727695.1 [NCBI]
CDS location
range 160950 -> 164213
strand -
CDS
ATGGCTTCTGCATTTGAAGATTATGTAAACGGGGAACTCCCCAAACGGGTATCATCAATTGATGAACCCACTTCTGTAGTTAATGGACACATCCCGGTTTCTACCGGGGTGGGTCTTAATACCACTTTCGTTGATCCTGTCACTATACCTGGATTAAAGGGTGAAGATGGTGCGCCAGGTAAAGATGGCGAACAAGGTCCTCCTGGTCCGGTTGGTCCAGCTATCAATATTATCGCTAATGTTGATCTAGCAACATTCGAACAAGATATTAAACCATTAGATACGCATAATGTCGGTGATGCTTGGTTCGTTGAAGATCGGCTATGGGTATGGGAATCACCGCTAGGTAATGAAGATCCCCCTGTAAAAGGTCGTTGGGTTGAAACAGGTTCACTTCGTGGTCCAGATGGTACTGGTCTAGTTATCCGTGGTCGTTGGCCTAATAACTTAGAATTACCTAAGACTGAAAGTAATAAACCTGGTGATGCTTATTCATGGAATAATCAACTCTGGGCGTGGATGCTTATCTCAGGTAATAATCCGCCAGAGAATCCAACTATTGATGACTATGATTGGTTCCCAGTTACACCACAGGGTGAACGTGGACCTGAGGGCCCCGAAGGTCCTAAAGGTGAAGATGGTGATATTGGTCCTGAAGGTCCTCAGGGCGAACCAGCAATGCCATTCACCATTAAGGATTCACTACCATCTCCAGCTGATTTACCTGATCCATCTGTAGCTAAAGAATCAGAAGCATACTTAGTTACTATGGAAGCTGGTAAACCAGGGCATCTATTCATCTTTGTAAAAGGTGCATGGTCAGACCTAGGTACTTTCCAAGGTCCTGAGGGTCCACAAGGTAAACCAGGTAACACAGGTGATCCGGGTCCCGATGGTAAGCAAGGTGAACCTGGTCCGCAAGGTCGTAACTTAGAAGTAGTTAAAGCGGTTGAAACTGCTGACGATCTATTAACCACCACTGGTGTAGAACAATACCAAGGTGTTTCAGTACGTTCCACCAATACGGTTTATGTACTGACTGGCCAAGATCCGACTGTTGATATCTCATGGACAGCCATGGGTTCATTCCGTGGTCCTCAGGGTCCTGAAGGTCCTAAAGGTGAAGACGGTGATCAAGGTCTACCTGGTGAGCCAGGGGCACAAGGTAAATCGGCTTTCCAAGTAGCATTGGATAATGGGTTCACTGGTACTGAGGGTGAATGGTTAATCAGTCTACATGGTAAGAACGTAGTTATTACTGGTGCTGTTGCCAATGAGGCAGCCCTACCGGCAGATGCCCCTGATCAGGCAGCTTACTTCACACAAGACACATCTACCTTATTTGTTAAGATAGATGGTAATTGGGTAAATAGTGGTACACACCGTGGACCAAAAGGTGAAGAAGGCCCCGAAGGTCCGCAAGGGCCAGATGGTAAACAAGGCGAGCCGGGTCCCGTCGGTGAACCTATCCAGATCATCGCGGCAATTGACACAACCGAAGATACCCCTCCTACAGCAACTACCGAGAATCAGTGGAAAGCATACGCTGTTAAGTCCACGGGCGAAGTATTTGTTAACATGGACGGCAGTAGCTGGACTAGTATTGGTATCATGGCAGGTCCGCAAGGTAAGCCGGGTGAAGGTTTAAACATTAAAGGTGTTCTAACCGACGTATCCCAATTACCTAAGAAGGATACTAACCCTGAATTAACTACTGGTGATTCGTATTGGGTTGAGACCGACAATGGTCCGATGCTTTATACTTACCAAGGTCAAGAGATTGATGGCTATATCGGCCCAATTGACTTAAATGGTGAACAAGGTATTCAGGGCGTTGAAGGTCCTCAGGGTCCTGAAGGTAAACAAGGTGGTGGGCTATTAATTATTTACGTTGGTGATGATGCTGGTAAACCAGCTGCATCTGCTGATAACGTAGGTAAAGGTATTGCCATTCACACCAACACTGAAGGACAAGTAGAAGTATTCGTATGTATTGATACAGAAGGTACATTTACTTGGGAAAGCCTAGGTGTCCTAGCTATGGGTCCGGAAGGCCCACAAGGTCCTGAAGGTAAACAAGGTGTTCCAGGCATACCTGGTAAAACCGGTCAGAAAGGTGAACGTGGATCCTCTTGGGTAATTCTACCTGAAGGTCAAACTGCACCCACCTCTATCGATGGTAACCGTGGCGACTGGTGTATCGACAAAACTGGCACTGTCTGGTATAAAGATGCTAACTGGGTTGTATTCTACAAACTAATGTCAGTTCCAGTTAGTGAAGTTGATCCAGAAGATGTCGATAAGAAAATGGTTCGGTACAAACTCGGTTGGACTGAACTACCTGTTGATGAAGTACCAAATGCCGAGGTTGGTGTTTTCTATGGTCGTCATAAAGCAACAGCTGATGGTGCTATTGAATGGACGGCTATTGAACTACCGACACCTGCTATTGATGCTGTACCTAATCCAACTGTCAATGCACAATACGTTCGTAAAGGTATTGCAGGTGGTAAAACTGAATGGGCTACCATTACATTCCCAGAAATTCCTTCAGATGTAGTACGCGATACTGCACAAGCTACTAAGCCTCAAGGTCGTGTAGCTGGTAACTGGGTTGATGTAGCACCTCTGCAAACCGATGATACTCTAATGGGTATGCAAAATGGTGAATGGGTAGCTGTACCAGCCGCAGTTATTGGCGAAGTACCTAGTGAAGGCGCTAATGGCACTAACTATGTACGTGAGAAAACAGCTAGTGGTTCTAAATGGACACCTGTAACTATTATAGTTGATCAAGCTGATGCTACTAGTGGACAACTATTCCTACGTAACGCTGCGGCTAAATCATGGACTCTATTCCAAGGTCCGAATAATGATGTAACCGCTGATGGTGATTGGGTACGTAGCCGTACTGGTACTAATATTACTTGGAAGAAGCTAGATAAATCATTCGATGTATATAGTCTGAAATCAAGTACATTCACTGGTACAGCTTTAACTCTAACACCAGCTAACCAACAGTGCTATAGGGTTCAAACTGCTGCTAACCAAACCATTACACTAGAGAATGGACCTGTTGATCGTATGGTAACGGCTGTTCTTGTACTACTTGGTAAGGTAGCTATGCCAACACTATCTAGTGCAGTGCTACAGTGGAACAATGGTACTCCATTAATAGTAGATGACCTAGGCGATACTAAAACAATTCTTACTCTCCTATGGGACGGTACTAATTGGGTAGTTTCCAAAGGTGCTGTTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
32fa0141b91c6911a58d85aac305d82efeb2c7b936efbafcd59a65638d602500
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6652
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole-Genome Sequence of Pseudomonas phage Brmt Fujiki,J., Nakamura,T., Nakamura,K., Tmamura,K., Ichikawa,N., Ishiguro,Y. and Iwano,H. 2021-07 — GenBank