Protein

View in Explore
Genbank accession
QSM00872.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,76
Protein sequence
MGGYLGQGVGDIITPDKVQGGTVTVTSDSTLSSKINADLIYVDFSSSLNITITLPKVSNKLRFSDITLEIINAPSANFNTKRLTIAMDPSDTFVGSNGETSTKVLDSKIVATGQRITLTHDSDKYWKRILLSENDPLGVSQKATAVPYGVTLSEYFLNASSGFYRIDSGTYYTNDMGFDPGIWYDILVTSHEISKYKTILAINSDGNVMNGAFIAGSWTGFKGTNIPPGVPIPYPGSTAPPGYLLVNGGSFDKTKYPQLGLLYPSGVLPDLRGQFIRGWDNGRGIDPSRSILSDQSATQLRPALWDHFGKDGSVATNAIGIGFSDPDTLTTSQPVNARSSGNVIPEAGNGDTGITGNILTSGVGGTGYWISTRPRNVAYNYIVRAQ
Physico‐chemical
properties
protein length:386 AA
molecular weight: 41224,63040 Da
isoelectric point:5,65653
aromaticity:0,09326
hydropathy:-0,19145

Domains

Domains [InterPro]
DC_1413
STR
5–386
DC_1413
IPR051934
Unmapped
179–294
IPR051934
SSF88874
STR
223–385
SSF88874
IPR037053
ATT
224–277
IPR037053
IPR011083
ATT
229–276
IPR011083
QSM00872.1
1 386
Architecture
STR
ATT
STR
STR 5-223 | ATT 224-277 | STR 278-386
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QSM00872.1
1 386
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9471
Central domain 17 220 205 0,0211
C-terminal 221 386 165 0,8640
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-220
C-terminal
221-386

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage YerA41
[NCBI] 		2815754 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia ruckeri
[NCBI] 		29486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QSM00872.1 [NCBI]
Genbank nucleotide accession
MW570730 [NCBI]
CDS location
range 106986 -> 108146
strand -
CDS
ATGGGTGGTTATTTAGGTCAAGGAGTGGGTGATATTATCACTCCTGATAAAGTTCAAGGTGGTACTGTCACTGTAACTAGTGATAGTACTCTTAGCTCAAAAATAAATGCTGATTTAATTTATGTTGATTTTTCTTCATCATTAAATATTACTATTACATTACCAAAAGTAAGTAATAAATTAAGATTTAGTGATATTACCTTAGAAATTATTAATGCTCCATCAGCTAATTTTAATACTAAAAGATTAACTATTGCTATGGATCCATCAGATACTTTTGTAGGTAGTAATGGAGAAACTTCAACAAAAGTATTAGATTCAAAAATAGTAGCTACAGGTCAAAGAATTACTTTGACTCATGATAGTGATAAGTATTGGAAAAGAATATTACTATCTGAAAATGATCCATTAGGAGTATCTCAAAAAGCTACAGCAGTACCGTACGGAGTAACTCTATCTGAATACTTTTTAAATGCATCATCTGGATTCTATAGAATTGATAGTGGAACTTACTATACTAATGATATGGGATTTGATCCAGGAATATGGTATGATATATTAGTTACTTCTCATGAAATCTCCAAGTACAAGACAATACTAGCCATCAATAGTGATGGTAATGTAATGAATGGGGCATTTATTGCTGGATCATGGACTGGATTTAAAGGTACTAATATTCCTCCAGGAGTACCTATTCCTTATCCTGGATCTACTGCTCCTCCAGGGTATTTGTTAGTCAATGGTGGATCTTTTGATAAAACTAAATACCCTCAGTTAGGATTACTATACCCTTCAGGAGTCCTTCCGGATCTTCGTGGTCAGTTTATCCGTGGGTGGGATAATGGACGAGGAATTGATCCTAGTAGGAGTATATTAAGTGATCAATCAGCTACCCAACTAAGACCTGCTTTATGGGATCATTTTGGTAAAGATGGTAGTGTTGCTACTAATGCTATTGGTATAGGATTTAGTGATCCTGACACTTTAACTACAAGTCAACCAGTTAATGCTAGATCTAGTGGTAATGTAATCCCTGAAGCTGGTAATGGTGATACTGGGATAACTGGTAACATATTAACATCAGGAGTAGGTGGTACTGGTTATTGGATATCTACTAGACCTAGAAACGTAGCTTACAATTATATTGTAAGAGCTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cc71416d1b66e08ce6ebc1258432f0abbd68260a17cf8f79855ec0fb24ce595e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7226
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50