Protein

View in Explore
Genbank accession
ALA46459.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MYSVQIAVSDGTLARISLSIEYFEKDDITLYRNLETTPLVLGTDWQWDGDTTINLLTNTPVTDGEYITVRRNTNIDRAFNIYDGGAAFSRDTLDENFRQMIYLAQEFTEGNGLTGLFFPLDMHGFKITNLGDGTDPKDAVNKGQLDVVDQRVTNLEESFVTNTVSYPWYELTTVVKDTFSPPFVFDKAAVFLNGICQTLGYSYVVVSNQILLADPVPVGTMFFARLGEDVGLDPDYATADQLAAAIVDRVAEDAALQTQVDSKAAKGVNSDITQITGLTTPLSTAQGGTGNNTGTALTATKLATARALQVALGSTTAASFDGTADVSPGVSGTLPLANGGTGATAAPAARTNLGSGTTGDAVFVASTPLAGRNALQAATYIGVVDGSPASAGNVGEVLTAVSASPVALTSGVAANVTSLALTPGIWEVTSIGQSIPAGGGSSGGVSAGLSTVSATLPTNWYEVYTRGYSVNGTATTSLPTRMFNITTNTTVYCVVNLTFSGGTYTARGTITARRIR
Physico‐chemical
properties
protein length:516 AA
molecular weight: 53759,22810 Da
isoelectric point:4,39623
aromaticity:0,07946
hydropathy:0,06163

Domains

Domains [InterPro]
DC_0126
ATT
2–166
DC_0126
IPR005604
ATT
3–108
IPR005604 DC_1547
IPR008635
RBD
126–164
IPR008635
G3DSA:6.10.250.2040
STR
127–179
G3DSA:6.10.250.2040
ALA46459.1
1 516
Architecture
ATT
STR
ATT 2-166 | STR 167-516
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage BF25/12
[NCBI] 		1698708 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dickeya sp. B16
[NCBI] 		1778540 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALA46459.1 [NCBI]
Genbank nucleotide accession
KT240186.1 [NCBI]
CDS location
range 3150 -> 4700
strand +
CDS
ATGTACTCAGTTCAGATTGCTGTATCAGACGGCACTCTAGCTCGAATCTCTCTGAGTATCGAGTACTTTGAGAAAGATGATATTACGTTGTACCGCAATCTGGAAACAACCCCTCTGGTACTGGGAACTGATTGGCAATGGGATGGTGATACAACCATTAACCTGCTAACGAATACCCCGGTAACGGATGGGGAGTACATTACGGTTCGACGCAATACAAACATTGACCGTGCATTTAATATCTACGATGGCGGTGCGGCATTCAGCCGAGACACACTAGATGAGAACTTCCGCCAGATGATTTACCTGGCCCAGGAGTTCACAGAAGGGAACGGCCTTACGGGGCTGTTCTTCCCACTGGATATGCACGGTTTCAAGATTACTAACCTGGGTGATGGTACAGACCCTAAAGACGCTGTGAACAAAGGCCAGCTGGATGTAGTAGACCAGCGCGTGACTAATCTGGAGGAATCCTTTGTCACTAACACTGTGAGCTACCCGTGGTATGAACTAACCACAGTGGTAAAGGACACATTCTCCCCACCGTTCGTGTTTGACAAAGCTGCCGTGTTCCTTAACGGCATCTGCCAGACTCTGGGGTACAGTTACGTTGTGGTGAGTAACCAGATTCTGTTAGCCGACCCGGTACCGGTGGGTACTATGTTCTTCGCCCGTCTTGGTGAGGATGTGGGTCTGGACCCGGACTACGCCACCGCAGACCAACTAGCTGCTGCCATTGTTGACCGGGTTGCCGAGGATGCTGCCCTACAGACTCAGGTAGATAGCAAGGCAGCAAAGGGTGTGAACTCGGATATTACCCAGATTACTGGCCTTACTACTCCACTGAGCACTGCACAGGGCGGTACAGGGAACAACACGGGGACTGCACTAACTGCTACCAAGTTGGCTACCGCACGTGCCCTTCAGGTCGCACTGGGTAGTACTACGGCTGCAAGCTTCGACGGTACTGCGGATGTATCACCCGGTGTGTCGGGTACACTCCCACTGGCTAATGGCGGCACGGGGGCTACTGCTGCGCCTGCCGCCAGGACTAACCTCGGCTCCGGCACAACAGGTGATGCTGTGTTCGTTGCCTCTACTCCACTAGCAGGTCGCAACGCGTTACAAGCCGCAACCTACATTGGTGTTGTTGACGGCAGCCCCGCCAGTGCAGGGAATGTTGGCGAGGTGCTAACTGCTGTTAGTGCCTCTCCGGTAGCACTAACCTCTGGGGTAGCAGCTAACGTGACTAGTCTAGCACTTACACCCGGTATTTGGGAGGTGACATCTATTGGACAAAGCATCCCAGCTGGTGGTGGGTCGTCCGGCGGTGTATCCGCGGGATTATCAACCGTATCAGCTACACTACCCACTAACTGGTATGAGGTTTATACTCGTGGGTACTCAGTAAACGGGACAGCTACCACCAGTCTACCTACTCGGATGTTTAACATTACCACGAATACCACTGTGTACTGTGTAGTGAACTTAACGTTTTCGGGGGGCACTTATACTGCTAGGGGCACAATAACCGCACGCAGAATTCGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5932e66091174381140dd6abda1ed84208fb5be223acb34d6fa01404c6f33a5d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7767
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bateriophages against Dickeya spp. of Phalaenopsis orchids Dreo,T., Naglic,T., Alic,S., Peterka,M. and Ravnikar,M. 2015-10-29 — GenBank