Protein

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Genbank accession
YP_003344958.1 [GenBank]
Protein name
membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGAGILIDYNDGRPRMEITAGLRAPAYCTSFNQRAQSNKTLTINTPLTAGSQVVVALTRPVEVIEVFDQTLVIPDPFYVTSVTRNGNSGITLRGEDAYGAYSGLPQWAGVIMEVLPVGSRNAGLLVANSTDFTAISNVAKLMTCRYAKRVRVNGSMALPVSGVPFARWDDGNVSVGFDGGSIIVRNASYGGIDDVAASVDMDLVIFNNTPPTPGAGITMTNSQNQVTFSTVNKPFVYDRTINIGTSDQNIGNSLIQLSYTGALIQNNGGYNHVRMNGIRMAGNNVRVAKNRVIGNYSRQQFQMPGKNIAVPTPLLVIPNMY
Physico‐chemical
properties
protein length:321 AA
molecular weight: 34433,75510 Da
isoelectric point:9,24607
aromaticity:0,07477
hydropathy:-0,03738

Domains

Domains [InterPro]
IPR045604
STR
4–297
IPR045604
YP_003344958.1
1 321
Architecture
STR
STR 4-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003344958.1
1 321
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4861
Central domain 11 203 194 0,0180
C-terminal 204 321 117 0,9977
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-203
C-terminal
204-321

Taxonomy

  Name Taxonomy ID Lineage
Phage Sodalis phage SO-1
[NCBI] 		673375 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sodalis glossinidius
[NCBI] 		63612 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003344958.1 [NCBI]
Genbank nucleotide accession
NC_013600 [NCBI]
CDS location
range 20482 -> 21447
strand -
CDS
ATGGGTGCTGGAATACTTATCGACTACAACGACGGAAGACCGCGCATGGAGATCACCGCAGGGCTTCGCGCGCCAGCATACTGCACCAGCTTTAACCAGCGGGCACAGTCCAACAAGACGCTAACCATTAACACCCCTCTTACGGCGGGGTCACAGGTCGTCGTCGCGCTCACTCGCCCGGTAGAAGTGATTGAGGTATTCGACCAGACCCTGGTAATACCCGATCCGTTTTACGTTACGTCGGTTACGCGCAACGGTAATAGCGGAATAACCCTGCGCGGGGAGGATGCGTATGGCGCGTACTCCGGTTTACCACAATGGGCGGGCGTCATAATGGAAGTGCTGCCGGTTGGGTCGCGTAACGCGGGTTTACTGGTGGCGAACTCGACGGACTTCACCGCAATATCCAACGTGGCGAAGCTGATGACCTGCAGATACGCAAAGCGCGTGCGCGTCAACGGGAGTATGGCCTTGCCTGTTAGTGGTGTTCCGTTCGCCCGCTGGGATGACGGCAACGTATCAGTTGGCTTCGATGGCGGAAGTATTATCGTACGCAACGCGTCCTACGGGGGCATCGACGATGTGGCGGCTTCGGTGGACATGGACCTGGTAATATTCAACAATACACCCCCCACACCAGGGGCTGGGATCACCATGACGAATAGCCAGAATCAGGTCACGTTCTCGACGGTGAACAAGCCGTTCGTATATGACCGCACTATTAACATCGGAACGAGCGACCAGAATATTGGAAACAGCCTGATCCAGCTTTCATACACCGGCGCGCTGATTCAGAACAACGGGGGCTATAACCACGTTCGAATGAACGGGATACGCATGGCGGGTAATAATGTGCGCGTCGCTAAAAACCGCGTCATCGGCAACTACTCACGGCAGCAATTCCAGATGCCAGGTAAAAATATTGCCGTACCTACCCCGCTACTCGTCATCCCGAATATGTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
387f5dd8650a91556af19b6a6040e2ea987712a5ad220085c1a81f16783cfe39
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8586
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Molecular characterization of an active bacteriophage infecting the tsetse endosymbiont Sodalis glossinidius Young,S.A., Darby,A.C. and Welburn,S.C. 2005-07 — GenBank