Protein

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Genbank accession
YP_009788866.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVSYQGDGTTTNFDFNFSGGYLRQSDVKAYVYDNLTGLTSPWTPVFVGPNTVQYKPALPATQYLVIYRDTQKTVPMVDFTTGAPMTEVNLDTVAEQSVFVAAEMTDRFDSVNSTSADAIVRSYDALTKAGSALDASAAATATADDARAKAVSAESKADAAVAQAADAHSIATGIDGKAQTALDQSTPALANANAALDVAGQALAIAQQQTMPSTGGTFTGPVSGPTPAPGDVSTKLATTAFVADAIASALIGQIVWEARTSARAGYVKLNGALLSRTSYPALWAYAQASGALVNEATWAGGSYGCFTSGTDGTNFRVPDLRGEFVRCLDDARGIDTGRGIGTWQDSTNRSHSHSASTGGVGDHIHSAWTDGQGWHGHGVSDPGHSHFGGLQTFAGGGQGASGNPNFVNQRWVDGSGTGISINGDGTHGHNVGIGYAGSHSHTVTVNADGGNETRPRNVALLATMRAL
Physico‐chemical
properties
protein length:467 AA
molecular weight: 48045,99780 Da
isoelectric point:5,25132
aromaticity:0,07709
hydropathy:-0,20792

Domains

Domains [InterPro]
DC_0245
STR
1–464
DC_0245
IPR005604
ATT
2–109
IPR005604 SSF88874
IPR037053
ATT
250–327
IPR037053
YP_009788866.1
1 467
Architecture
ATT
STR
ATT
STR
ATT 1-109 | STR 110-249 | ATT 250-327 | STR 328-466 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RS-PII-1
[NCBI] 		1932892 Uroviricota > Caudoviricetes > Autographivirales > Sukuvirus > Sukuvirus RSPII1
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009788866.1 [NCBI]
Genbank nucleotide accession
NC_047804.1 [NCBI]
CDS location
range 6430 -> 7833
strand -
CDS
ATGGTGTCGTACCAAGGTGACGGCACCACCACCAACTTCGATTTCAACTTCTCCGGGGGCTATCTGCGTCAGAGCGACGTGAAAGCCTACGTGTATGACAATCTGACCGGCCTCACCTCACCGTGGACGCCGGTATTCGTCGGGCCGAACACGGTCCAGTACAAGCCGGCCCTGCCGGCGACGCAGTACCTCGTGATCTACCGGGACACGCAAAAGACTGTCCCGATGGTTGACTTCACGACCGGCGCACCGATGACTGAGGTGAACCTGGACACCGTGGCCGAGCAGTCCGTGTTCGTGGCCGCCGAAATGACCGACCGCTTCGACTCGGTGAACTCGACCTCGGCTGACGCCATCGTGCGCAGCTACGACGCACTGACCAAGGCCGGGTCCGCACTCGACGCCTCCGCTGCGGCCACGGCCACGGCGGACGATGCGCGGGCGAAGGCTGTGTCCGCCGAGAGTAAGGCTGACGCCGCTGTGGCCCAAGCCGCCGACGCGCACAGCATTGCTACCGGCATCGACGGCAAGGCGCAGACGGCGCTGGATCAATCCACGCCAGCACTCGCCAACGCTAACGCGGCACTGGACGTGGCAGGGCAAGCCCTTGCCATTGCCCAGCAACAGACCATGCCCTCGACGGGAGGGACGTTCACTGGGCCGGTATCAGGACCGACTCCGGCCCCCGGAGACGTATCGACCAAGCTGGCGACGACCGCATTCGTTGCGGATGCTATTGCCAGCGCGCTCATCGGGCAGATTGTGTGGGAGGCCCGCACGTCGGCACGCGCTGGCTACGTCAAGCTGAACGGTGCCTTGCTGTCTCGCACGAGCTACCCGGCGCTATGGGCTTACGCTCAGGCATCCGGTGCGCTGGTCAATGAGGCCACATGGGCCGGTGGTAGCTATGGCTGCTTCACCTCGGGCACTGACGGCACGAACTTCCGTGTGCCGGACCTCCGTGGCGAGTTCGTCCGCTGCTTGGATGACGCTCGCGGCATCGACACCGGGCGCGGCATCGGTACGTGGCAGGACAGCACCAACCGCTCGCACAGCCACAGCGCATCGACTGGCGGAGTTGGCGACCACATCCACTCCGCATGGACTGACGGCCAAGGCTGGCACGGGCACGGTGTATCCGATCCGGGGCACAGCCACTTTGGCGGCCTGCAAACCTTCGCGGGTGGTGGGCAAGGTGCATCCGGCAACCCGAACTTCGTGAACCAACGTTGGGTGGACGGCTCGGGGACCGGAATCAGCATCAACGGCGACGGCACCCACGGTCACAACGTGGGCATCGGTTACGCCGGTAGTCACAGTCACACAGTCACCGTCAACGCTGACGGTGGAAACGAAACCCGTCCGCGCAACGTCGCGCTGCTCGCAACCATGCGGGCGCTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fb913cd5c2459f605182c3cbbacb8eb0dc28775640aacc553fb0a84fe5d29f8d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8026
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Whole Genome Sequencing Analysis of a Novel Lytic Bacteriophage RS-PII-1 infecting Ralstonia solanacearum Su,J., Liu,J., Yu,H., Guo,Z., Sun,H., Fan,G., Gu,G. and Wang,G. 2017-09-19 — GenBank