Protein

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UniProt accession
A0A2K9VCP8 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADYSGLIDKFKTDDIPKGTDYEELITLAGNAKDEADNSVIDNHDGTITVNEQKYKPVEDNKDGNITVNGTKYKPVEDNEDNTITVNGITFAPVIDNQNGTITVNTQTYEPAHADKVPLKSDIGSITDYTIAGNNLVQKIVSDFKSRSFNVLYYGATSDKSSDSAPAINQAIEDASKVGGTVWVPAGTYLLSNDLIFKSNITFKMDNNATLYAPGQLFRFDTTSTGYNGGVSNVVVDGGTFSGDYDAKNVVNSHANANAFNGCLHHASNIEFKNITFRMTTSNSHTLDLGGCRDINIHDCVFEGFYPQPVREYVEAIQIDYSSKVGLTYHDSIQDANVDGLITINVKIENNTFRPIYGEDGTTIKWYAPNMCGEHVVYSNGEPTNIVIKNNHITDGYVFDDNRGSVGWIHFFGVHNVIIQGNVFESTKQQQSLAIGIICSNADGLTDAVSGNTVSGTYSYQSDVIIKDNTFKGFKTGSVNHGVISVYGNDTHGSTNLQIIDNNFIDNLPDSFDWTTDTPGIDLIQTRGFKDTKVNNNYANDLRRFLFMQENDGTTIQSSYQVNNNIVKNVAYVPIVMRTLPASNQTIDINNNQFNMVRECVTVLNTNGYTNFVNNDILFHTSSHLSSTNGYSNSAVTIGSYNLNLANNTVIQSSNSAYQYPNAFVLSAGPISYSGNYFNGSSISNWKVPKESLLSTQQRFGVQSDAIVCPSGTDIGTFLMGASVPIGLSIIRDNNTATNLIVYKENSNYGYALKPSTKDGSFQIGHWYQGTWTSWANI
Physico‐chemical
properties
protein length:778 AA
molecular weight: 85250,83130 Da
isoelectric point:4,81804
aromaticity:0,10154
hydropathy:-0,36722

Domains

Domains [InterPro]
DC_1223
ATT
1–207
DC_1223
IPR011050
STR
144–506
IPR011050
IPR012334
STR
148–572
IPR012334
IPR024535
ENZ
149–304
IPR024535
A0A2K9VCP8
1 778
Architecture
ATT
STR
ATT 1-207 | STR 208-572 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A2K9VCP8
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,9881
Central domain 162 686 526 0,9916
C-terminal 687 778 91 0,9535
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-686
C-terminal
687-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Bacchae
[NCBI] 		2079429 Uroviricota > Caudoviricetes > Herelleviridae > Harbinvirus bacchae >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUV59992.1 [NCBI]
Genbank nucleotide accession
MG765277 [NCBI]
CDS location
range 61933 -> 64269
strand +
CDS
TTGGCAGACTACAGTGGTTTGATTGATAAGTTTAAAACAGATGATATACCTAAAGGTACAGATTATGAAGAGTTAATTACCTTAGCTGGAAACGCAAAGGACGAAGCCGATAACTCCGTTATAGACAACCATGATGGAACTATTACAGTTAACGAGCAAAAGTATAAGCCAGTTGAGGATAACAAAGATGGTAACATTACCGTTAACGGGACAAAATATAAACCTGTAGAGGATAACGAGGACAACACCATTACTGTGAATGGGATAACGTTTGCTCCAGTAATAGATAACCAGAATGGTACTATTACGGTTAACACCCAAACTTATGAGCCTGCTCATGCAGATAAGGTGCCCTTAAAATCTGATATTGGCAGTATCACTGATTATACAATCGCAGGAAACAACTTGGTTCAAAAGATAGTATCTGACTTTAAGTCAAGAAGCTTTAATGTTTTATACTATGGGGCAACTTCTGATAAGTCTTCTGATAGCGCCCCGGCTATTAACCAAGCCATAGAAGATGCTAGTAAGGTAGGCGGTACTGTATGGGTTCCGGCAGGGACTTATTTATTAAGTAATGATTTAATATTTAAGTCTAATATAACCTTTAAGATGGATAATAATGCTACCCTTTATGCTCCGGGGCAGTTATTTAGATTTGACACAACCTCTACCGGATATAATGGTGGTGTATCTAATGTAGTTGTAGATGGTGGAACTTTTTCGGGGGATTATGATGCCAAGAATGTTGTTAACTCACATGCCAATGCAAATGCCTTTAACGGGTGTTTGCATCATGCTAGCAACATTGAGTTCAAGAATATAACGTTCAGAATGACTACTTCCAACAGTCACACCCTTGACCTTGGAGGTTGTAGAGATATTAATATTCACGATTGTGTCTTTGAAGGATTCTACCCGCAGCCCGTAAGAGAATATGTTGAGGCTATCCAAATAGATTACTCATCAAAAGTAGGGTTAACTTATCATGATTCTATTCAGGATGCTAATGTTGACGGGTTAATTACAATTAATGTTAAAATAGAAAATAATACCTTTAGGCCAATTTATGGGGAAGATGGCACTACTATTAAATGGTATGCGCCTAATATGTGCGGAGAACATGTTGTATACTCTAATGGGGAGCCAACTAACATTGTTATAAAAAACAACCATATAACTGATGGATATGTATTTGATGACAATCGAGGGTCGGTAGGTTGGATACATTTCTTTGGGGTTCACAATGTTATAATACAGGGTAATGTTTTTGAGTCAACAAAACAACAACAGAGCTTAGCCATTGGAATTATATGTTCTAATGCAGATGGCCTAACAGATGCTGTTTCCGGTAATACGGTTTCAGGAACTTACAGCTATCAATCTGATGTTATAATAAAAGATAATACTTTTAAGGGATTTAAAACCGGTTCAGTAAACCATGGTGTAATTAGTGTATATGGGAACGACACTCATGGTAGCACTAACTTACAGATTATTGATAATAACTTTATTGACAATTTGCCAGATAGTTTTGACTGGACTACCGATACCCCCGGAATAGACTTAATTCAAACGCGCGGATTTAAGGATACTAAGGTTAACAACAATTATGCCAATGATTTAAGGCGATTCTTATTTATGCAAGAAAATGATGGAACGACCATACAGTCAAGCTATCAAGTCAACAACAATATTGTCAAAAATGTGGCTTATGTACCTATAGTAATGAGAACGCTCCCTGCGTCTAATCAGACAATAGATATAAATAATAACCAGTTTAACATGGTAAGGGAATGTGTTACTGTATTAAATACTAATGGTTATACTAATTTTGTTAATAATGATATCTTGTTCCATACCTCATCTCACTTAAGTTCAACCAATGGATACTCCAACAGCGCTGTTACTATTGGTAGCTATAATCTAAATCTGGCTAATAATACTGTTATTCAGAGTAGCAATTCTGCTTATCAATACCCAAATGCTTTCGTGCTATCAGCGGGCCCAATTAGTTACTCAGGAAACTATTTTAACGGTAGTAGCATATCCAACTGGAAAGTACCAAAAGAGAGTTTGTTGTCTACTCAACAGCGGTTTGGCGTTCAGTCTGATGCAATTGTCTGCCCTTCTGGTACTGACATAGGAACATTTTTAATGGGTGCTTCTGTACCAATTGGACTAAGTATTATACGCGATAACAATACTGCTACGAACCTTATTGTTTATAAGGAAAATAGCAATTATGGTTACGCTTTAAAGCCAAGTACAAAGGATGGAAGTTTTCAGATAGGACATTGGTACCAAGGAACATGGACTAGTTGGGCTAACATTTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
49962adab6190ff3d9eb2be4eac1d78a75ee4b9aed4c6495b568c579c2c89f24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7233
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50