Protein

View in Explore
Genbank accession
BDD79826.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MQIDPSKSAVQNLLALVDASNPSAPNLPSEVTVSNLTSGSYANGADTKVTLTGTGPQGQTANFTGSVDVTYKRLALAAEAVVPSTPPTISVWSSKPTALAAILAYYGYVASEVTAPSMTIPTTAGADTVSLQASGSLIYEDGSTNVNVNWQRKTILLMHFDGGITDAAGHTTANTGTAGYTNASAKFGSGSFTTAAVNAYTSITDATDLHLTSGEWTIEFWLNPTNVTQDTQLIDKTAGARTDFANRAWVELNATALALKVDGTSSATLIGSGYITTGWQHIAIVQHAGTLTIYRNGVSVGSMSNSASWGNNSGNIVLGNNTFANNSNYVGYLDELRISNVARYTANFTAPTAAFALD
Physico‐chemical
properties
protein length:358 AA
molecular weight: 37190,61230 Da
isoelectric point:4,89915
aromaticity:0,08101
hydropathy:-0,02793

Domains

Domains [InterPro]
IPR057701
STR
7–108
IPR057701 G3DSA:2.60.120.200
IPR057701
STR
7–95
IPR057701 IPR013320
IPR013320
STR
150–345
IPR013320
PF13385
LEC
200–343
PF13385
BDD79826.1
1 358
Architecture
STR
STR
STR 7-108 | STR 134-349 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage FLC9
[NCBI] 		2906467 No lineage information
Host Burkholderia glumae
[NCBI] 		337 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDD79826.1 [NCBI]
Genbank nucleotide accession
LC667451.1 [NCBI]
CDS location
range 234171 -> 235247
strand -
CDS
ATGCAAATCGATCCTTCCAAGTCAGCAGTTCAGAATCTGCTGGCGCTTGTCGATGCGTCGAACCCGTCCGCACCTAATCTACCCAGCGAGGTGACAGTCAGTAATCTCACGTCAGGCTCGTATGCAAATGGTGCCGATACCAAGGTGACGTTGACTGGTACGGGCCCCCAGGGTCAGACTGCGAACTTCACTGGTTCGGTAGATGTGACGTATAAGCGTCTCGCACTAGCTGCCGAAGCAGTTGTCCCGTCTACCCCGCCGACGATCTCAGTGTGGAGTAGTAAGCCCACCGCATTGGCAGCTATTTTGGCGTACTACGGTTATGTCGCCAGCGAAGTAACGGCACCTAGCATGACTATCCCGACCACTGCCGGGGCGGACACGGTGTCACTGCAGGCCAGTGGTTCTTTGATTTACGAGGACGGCAGTACTAACGTCAATGTGAACTGGCAGCGTAAAACAATCCTGCTGATGCACTTTGACGGTGGTATCACTGACGCCGCAGGTCACACGACTGCCAACACGGGTACAGCAGGCTACACCAACGCCTCTGCTAAGTTCGGTAGCGGCTCGTTCACCACTGCGGCCGTTAACGCATACACCAGCATCACGGATGCGACGGACTTGCACTTGACAAGTGGTGAGTGGACAATCGAGTTCTGGCTCAATCCCACCAACGTCACGCAAGACACGCAGCTGATCGATAAGACGGCCGGTGCCCGGACGGACTTCGCTAACCGAGCCTGGGTCGAACTGAATGCGACAGCACTGGCACTTAAGGTGGACGGTACGAGTAGCGCGACGCTCATTGGTAGCGGCTACATCACGACCGGCTGGCAGCACATCGCGATCGTTCAGCATGCGGGCACGCTCACGATCTATCGCAATGGTGTCTCAGTAGGCTCGATGTCCAACTCAGCCAGCTGGGGTAACAACAGCGGTAACATCGTACTGGGTAACAACACCTTCGCTAACAACAGTAATTACGTGGGCTATCTGGACGAACTGCGCATCAGTAATGTGGCTCGCTATACGGCGAACTTCACGGCACCGACTGCGGCTTTCGCACTCGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
95c6539605b000a8e93090c1de41a7238398f24a2600f02493380f5aa234376d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6415
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H. 2022-11-19 — GenBank