Protein

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UniProt accession
Q5GQG2 [UniProt]
Protein name
Virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,82
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSDRFPLIVNETSRRIEELIAGDNLDLTGNGIALDGDVGLEGQSLHSNGSVVEWRFAGDVFLTGIQSVSDKIFSNCNISGTENALSNIGNDSLENSSITINGTSIPLGGSVTTADTNTTYSFAAVDGTTDVRKTIRLTSGGSGTSTDQDVTLVAGTNVSLTRAGNDIQISSSFTDTDTITTLRSAVGGNATSGDISIAGSGSTTVSQSVDGLTITIDSTDTDTITRLRGGTGENFLAGDFTLIAGDEVTLSQTGRDITINSVDTITRLKGGATGSFKSGDVTFTGSGATTVSQSQDGSTITIDSIDTNTITRIRGSNGGTLTSGDVTFLGSGVTTVEQSPDGRTITISSTDQDTTYDAALSGGLFLSGTSFSLKNNENINDQTIVKWDSSNFQLTNSIITDDGSTVTIGGDLLVTGTTTTINTQNLVVADNNIELRRGENLTGSNGGIQLNRTTDGTGLVTSFNAMQWFESGGYWRTWDGSVPHRLVTDDEIQTLTNKTLDSPTLNFPSLGAATATSINGLSFGSTVSASLSVGNSKAISFNNSVTFNTAQNDSTITVQLSNGGTVAYTSNTLAVFASTTSNQLRGVISDSTGVGKAVFNQNPSFADSITTSSSTFSVFNTGVTNINAFGAATTITMGAISGTTTIRNSLQVDGSATIGNESGDIITVNGATNFNNEDLTLRGSSDNPIKIGRGGNAIATNTRVGYRALESNTTGANNTAFGYESSFVLNTGSNNTSFGYQALRSSGIGEGNVAFGSQSCISVTEGVGNVGVGTLTLSSVTDTNYNVCIGHYAGAALTGSGNVLIGPASTEDSLSATYAPPAPTGNNQLVIASGTGVWIRGDNGFNVVMPNNVTIQKNLQISGDLTVNGTTTTVNSRVVTIDDKAIELGAVATINFVGNATLNSNVISNLPTTAGLIVGMEVQVLNVGITLPPGTIITSIGTDQIVLNGNIGGSGGTNVTFTAIGPSDTTANGGGIIVRGSTNKTILYDNDGILPFWKISDNVDIPSGKVFSINESSVLSATTLGSSVVNSSLTSVGTLQSLSVTGNVNLKGRITEKVVNNFVTSITPVSNELEVSAANGNTIIGTLAASAINTWNFTNLGLTNGSSITLTLIVDGNATAIYGDACKVEGNSITGGIQWSGGSPPANTSNIDILTFIVVRDTSGVTKVYGQGNTGFS
Physico‐chemical
properties
protein length:1177 AA
molecular weight: 120409,43140 Da
isoelectric point:4,27244
aromaticity:0,05268
hydropathy:-0,02897

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
Q5GQG2
1 1177
Domain Start End Length (AA) Confidence
N-terminal 1 656 656 0,7454
Central domain 657 855 200 0,7968
C-terminal 856 1177 321 0,5333
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-656
Central
657-855
C-terminal
856-1177

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-PM2
[NCBI] 		238854 Uroviricota > Caudoviricetes > Pantevenvirales > Nodensvirus > Nodensvirus spm2
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Tertiary structure

PDB ID
5607f449bdeb0909c0db04ee895426290c59a660d2298507063e4174f029a3b9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5728
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50