Protein

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Genbank accession
YP_010748692.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGPLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFSGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPISQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQSMTIDAPNSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNDSAALRFRIHKLSKTLDSGSVYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGAISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72985,81750 Da
isoelectric point:5,06182
aromaticity:0,08918
hydropathy:-0,15863

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
71–132
IPR040775 IPR012332
IPR012332
STR
136–684
IPR012332
IPR015331
RBD
138–684
IPR015331
YP_010748692.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010748692.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9940
Central domain 155 597 444 0,9849
C-terminal 598 684 86 0,8446
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-597
C-terminal
598-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage pink
[NCBI] 		2713312 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus pink
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010748692.1 [NCBI]
Genbank nucleotide accession
NC_073217.1 [NCBI]
CDS location
range 29018 -> 31072
strand +
CDS
ATGTCCAGCGGTTGCGGTGATGTATTGTCACTTAATGATTTACAAATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGTAAACAAGGCGGTGTAGCTGGTGGTGCGGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGATGCTGGTTTCTCCCCGGCATCTTTTAACTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCGGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTATTACGCATGGCGTGGCCCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACAGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTTGATAGCGTTCTTATCGACCGCGATTACACTTTCAGTAATAACGAGACCGTTAACTTCAGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATCGGCGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGTGCTACAACGCCGTGGGTGATTAAACCGTGGACCGACGATAATCAGTGGATAACCGACCCAGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTTCCTGGTATAGAATCCCTTCTCCCTCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTCGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGCGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGAAAAGATGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGCAAGGGTAACTATGTTATTGGCGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCTCAATTCTTACGAAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACTTCGTATCGTGCGGGGGAAAGTGGTGTTAAGACGTGGCAAGGTACGGTAGGTTCTACGACCTCTCGTAACTACAACCTGCAATTCCGGGATTCAGCAGTGCTATACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACTGACATGAACCCCGAAGATGACCGCCCAGGGGATTTCCCCATTTCTCAGTACCCGGTACATATGCTCCCATTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGTTTCGGTATGGACGGGCAAGGTCTATATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTTGCCCACGAAACAGTATTCACTAATATCGCAATAATCGACACCAATACTAAAAACTTCCCCGCGAACCAGATATATATCTCAGGGGCCTGCCGTGTAAACGGCCTTCGTTTGGTCGGCATCCGTTCAACTACCGAACAGAGCATGACGATAGACGCACCTAACTCCACTGTAAGCGGAATAACGGGCTTCGTGGACCCCTCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGATTCTGCGGCGCTTCGGTTTCGTATTCATAAACTGTCAAAAACCCTTGATAGTGGGTCCGTGTACTCCCACATTAACGGCGGGCCAGGTTCTGGTTCAGCATGGACCGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGGCTATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
37a75bf27f7fae9efbb98c3adbd5b2fa7c1144ba0feb4f594b169b115a44fcd2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6855
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank