Protein

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Genbank accession
YP_009858901.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,93
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDTGEHYSPNTNSIFHSDMPFVLVDGTYEATLGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQMLNFFEDQPRAGAELALTSAFAIGDSLAHGTYTYNGNLGHEESIARQGTGGTLLQSSGFQIYRPGGVSAGEAIARAWALIGFPSGVSVPPLDAANADYWDPNWQAPIGSAGRGHDHFYVCSSNIRGFVGKKGEIPSNVNINYQSPSFPTKVYVCRGSTTNMAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPSNVVSTYVGDDLNPSYPAAGDYYQPLATVWLGLPNTNSTIILTTEVIMGNINTAGQRVSTYSGQAWRVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTAYSYTQEWASRPDSMIFRRNGYIYTIKNLGNGNVELGVIIHAAEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64221,82100 Da
isoelectric point:6,59818
aromaticity:0,11973
hydropathy:-0,22462

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
YP_009858901.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009858901.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6302
Central domain 11 237 228 0,8941
C-terminal 238 593 355 0,7876
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-237
C-terminal
238-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage atrejo
[NCBI] 		2713277 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus atrejo
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009858901.1 [NCBI]
Genbank nucleotide accession
NC_048872 [NCBI]
CDS location
range 11759 -> 13540
strand +
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATACTGGTGAGCACTATTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCCACTCTAGGGGATGCAGGTAATGGATACTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAATGGTACCCATAGAGGATTCCTCAATGGTACTCAATCTCAGGTTGGTCAGATGCTAAACTTTTTTGAAGATCAACCACGTGCTGGAGCTGAGTTAGCTCTAACTTCTGCCTTTGCAATCGGTGATAGTCTAGCTCATGGTACTTATACATATAATGGTAATCTTGGTCATGAGGAATCTATTGCTCGGCAAGGAACTGGAGGTACTTTACTACAGTCTTCAGGTTTCCAGATCTATAGGCCTGGTGGTGTTTCTGCTGGTGAAGCCATTGCCAGAGCCTGGGCTCTTATTGGGTTTCCTTCAGGAGTTTCAGTACCTCCTCTAGACGCAGCAAATGCAGATTATTGGGATCCTAATTGGCAAGCACCTATTGGATCTGCTGGCAGAGGACATGATCATTTTTATGTATGTAGCTCTAATATACGTGGATTTGTAGGTAAAAAAGGGGAGATACCTTCTAATGTAAATATTAACTACCAATCCCCCTCCTTTCCTACTAAAGTATACGTTTGTAGGGGTTCTACAACTAATATGGCTGCGCAAGCCACTAGAAAGGTATATGTACAGGACTGGTATAACGTTACTCCTACTAAGGTTATTTGGTATGTGCTAAATCTGCGCTATTCTAATGGTAATATGGGAGTTTCTGGTAATCCATTTACTGGTTCAGATATCTTAATATCCCCATCTAACTTTACTATTAAAGGTGTTAGCCTACCAAATACAGGCTATAAATTTATTAACCAGAATGCTTTCGGAAACTTAGGCTATCGTCCTGATATGGAGTATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGCGGATTGTGGTCTCCTGTTAACTATGGGGGTGCAGCTTCTCAAATTAGCTTATATAAATTTGGCGTAGGTAAACAATGGTATGTAGACACTAATACCAACTCCATTGGTAATGAACATGGGCCTGTATGGAGTCCTAGTACAGTACCTTTAAGGTTATTCCCTAGTAATGTTGTCAGTACTTATGTTGGGGATGACCTCAACCCATCTTATCCTGCAGCAGGTGATTACTACCAGCCTTTAGCAACAGTCTGGTTAGGACTGCCTAACACCAATTCTACTATCATATTAACTACCGAAGTTATTATGGGTAACATTAATACTGCGGGACAACGTGTTAGTACATACAGTGGGCAGGCCTGGCGTGTACAAGGTAGACGCCAACAGAGTTACACTGCGGGGGACGGTATATTTCACCAAATCCTTACCTTACCCCCTGGCTATCTAGTACCATATCATAGTACTACAGCATATAGTTATACACAGGAATGGGCGAGCCGACCAGATAGTATGATTTTTAGAAGGAATGGTTATATTTATACTATTAAAAACCTTGGTAATGGCAACGTTGAGTTGGGTGTTATTATCCATGCTGCAGAAGCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e9b7b68a6642b762f20c084994e0b9e0847d0da730ab510fd4ce32428e15a4eb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2466
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50