Protein

View in Explore
Genbank accession
YP_005086978.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
Protein sequence
MTTPGALPPEGAYQNGDEYGTDLTEETARALVTQPYHNSYGGLPAAFMTGIGSFIGRALDGNPENDPTIGEVADYFIGWNRINAANASKIAQLENRLASGSTFMDDFARPNNLNALGNGWVQGGQGQGLGVYDNAARIDNTEIIGIDSGRRWAICPVMAAEDNVAVTAVVNPKGVAVPTMTSLFIRADENLTKFVYANVYGRSVYMGYGTRNGNTWVFNDWKSNTNYRLSEGSSVELAADSNVYRLTIDGVVVLEHTDTAGAVPVDATRRTVGFASETKIVNLLPSYSWGLAAFSHRPITFADMDGLRKAAEDALKAAEDAQGTVEGVQAAFAEYVAGQEAASNEGAFFIEDFSKLDDQPDMGPNWTVSQTGNVAIKGGAVGYQVAGESSATRAVFAQKPTNDDHYARALIATSTWDDTYTGLIVRGNDSMSQYVFARFYKGKIEIGTGTTGYVETVQYTKTGLSITAGSMVELRAVGNTYYVLVNSAVRGQVTLSALFGPNYRRTGMMLSRHQGAFWISYVTHVRMFITGDYAAPAFVGTGWSFWRLNNAADQSSGTTSGDKVFGDTVFDQVGPETRNVKRINDGAGIVEIEVPGWYQIDGRMKSDYSLTSDGSTSGTTLQAHINFINDETQPTYIIARAGGSVEGASMAEVSGLVYLQKGNRVRMGFYRSSGNMDPIGAPLGAATRFSGTLITSLKGARGETGAQGDVGPQGPIGEGLHFDLLVNTVAALPVSAVELTQALVKENGRIYLFKDGAWIEGPVLTGPKGDEGPSGPPNSLIVGSVTTGAEGSNASVSITGSAPMQVLNMTIPRGATGPTGPQPPLQKVTTLPATGVVGTIYWIEE
Physico‐chemical
properties
protein length:845 AA
molecular weight: 89675,86340 Da
isoelectric point:4,89477
aromaticity:0,09112
hydropathy:-0,17905

Domains

Domains [InterPro]
DC_1994
ATT
56–302
DC_1994 Coil DC_1340
DC_0667
STR
285–700
DC_0667
YP_005086978.1
1 845
Architecture
ATT
STR
ATT 56-302 | STR 303-843 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_005086978.1
1 845
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,8864
Central domain 116 349 235 0,5013
C-terminal 350 845 495 0,5245
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-349
C-terminal
350-845

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodococcus phage RGL3
[NCBI] 		2922221 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodococcus globerulus
[NCBI] 		33008 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_005086978.1 [NCBI]
Genbank nucleotide accession
NC_016650 [NCBI]
CDS location
range 16114 -> 18651
strand +
CDS
GTGACTACCCCAGGCGCACTGCCCCCCGAAGGGGCGTATCAGAACGGCGACGAGTACGGCACCGACCTGACCGAGGAGACGGCCAGGGCACTGGTCACTCAGCCTTACCACAACAGCTACGGGGGCCTCCCCGCTGCGTTCATGACCGGCATCGGCTCGTTCATCGGACGAGCCCTGGACGGCAACCCCGAGAACGATCCGACGATCGGAGAGGTCGCGGACTACTTCATCGGATGGAACCGCATCAACGCGGCCAACGCATCCAAGATCGCACAACTGGAGAACCGCCTCGCGTCGGGCTCCACGTTCATGGACGACTTCGCTCGTCCCAACAACCTGAACGCACTCGGCAACGGCTGGGTCCAGGGTGGACAGGGCCAGGGCCTGGGCGTTTACGACAACGCGGCCCGGATCGACAACACGGAGATCATCGGCATTGACAGTGGCCGGCGCTGGGCAATCTGCCCGGTCATGGCAGCCGAGGACAACGTCGCGGTGACGGCGGTCGTCAACCCGAAGGGTGTGGCTGTCCCCACCATGACCTCCCTGTTCATCCGAGCAGACGAGAACCTCACGAAGTTCGTCTACGCCAACGTCTATGGGCGCTCGGTCTACATGGGCTACGGCACCAGGAACGGCAACACGTGGGTGTTCAACGACTGGAAGTCGAACACGAACTACCGCCTGTCGGAGGGGTCCAGTGTCGAACTGGCTGCCGACTCGAACGTCTACCGCTTGACAATAGACGGAGTCGTGGTCCTGGAGCACACCGACACCGCTGGAGCCGTCCCCGTGGACGCCACCCGGCGCACGGTCGGCTTCGCATCGGAGACCAAGATCGTCAACCTGCTCCCGAGCTACTCGTGGGGCCTCGCTGCGTTCTCGCACCGGCCCATCACGTTCGCGGACATGGACGGGCTCCGCAAGGCTGCGGAGGACGCATTGAAGGCGGCAGAGGACGCACAGGGCACCGTAGAGGGTGTCCAGGCTGCGTTCGCTGAGTACGTTGCCGGCCAGGAGGCCGCGTCCAACGAGGGCGCGTTCTTCATCGAGGACTTCTCGAAGCTGGACGACCAGCCCGACATGGGTCCGAACTGGACTGTGAGCCAGACGGGCAACGTCGCTATCAAGGGCGGTGCCGTTGGTTACCAGGTCGCTGGCGAGAGCTCCGCGACCCGTGCCGTGTTCGCCCAGAAGCCCACGAACGACGACCACTACGCACGAGCCCTGATTGCCACGAGCACGTGGGACGACACGTACACCGGCCTGATCGTCCGGGGCAACGACAGCATGAGCCAGTACGTCTTCGCCCGGTTCTACAAGGGCAAGATCGAAATTGGCACTGGCACAACGGGTTACGTCGAAACCGTCCAGTACACGAAGACCGGACTGTCCATCACGGCAGGTTCGATGGTGGAGCTCCGAGCTGTCGGCAACACGTACTACGTGCTGGTCAACTCCGCTGTCCGTGGTCAGGTGACCCTCTCGGCCCTGTTCGGTCCGAACTACCGGCGTACCGGCATGATGCTGAGCCGCCACCAGGGCGCGTTCTGGATCTCGTACGTGACGCACGTCCGCATGTTCATCACGGGTGACTACGCCGCGCCGGCCTTCGTCGGCACCGGCTGGTCGTTCTGGCGACTGAACAACGCTGCGGACCAGAGTTCTGGCACCACGTCCGGTGACAAGGTGTTCGGCGACACGGTCTTCGACCAGGTCGGCCCCGAGACCCGCAACGTCAAGCGGATCAACGACGGCGCTGGAATCGTGGAGATCGAAGTCCCTGGCTGGTACCAGATCGACGGTCGCATGAAGTCGGACTACTCCCTCACGTCGGACGGCAGCACGTCGGGTACGACGCTCCAGGCGCACATCAACTTCATCAACGACGAGACTCAGCCGACGTACATCATTGCGCGAGCAGGTGGCTCGGTCGAAGGCGCGAGCATGGCCGAGGTTTCCGGCCTGGTGTACCTCCAGAAGGGCAACCGGGTTCGGATGGGCTTCTACCGCTCGTCCGGCAACATGGACCCGATCGGTGCTCCGCTGGGAGCGGCCACCCGGTTCTCCGGGACGCTCATCACGTCGCTCAAGGGCGCACGAGGCGAGACCGGAGCCCAGGGCGACGTTGGCCCCCAGGGGCCTATCGGTGAGGGTCTGCACTTCGACCTGCTCGTCAACACGGTGGCAGCACTGCCTGTCTCGGCTGTGGAGCTCACACAGGCTCTCGTGAAGGAGAACGGGCGGATCTACCTGTTCAAGGACGGGGCATGGATCGAAGGTCCGGTGCTCACCGGCCCGAAGGGTGACGAAGGACCGTCTGGTCCTCCGAACTCCCTGATCGTCGGCAGCGTCACCACGGGTGCAGAGGGCTCGAACGCCTCTGTGTCGATCACGGGCTCCGCACCCATGCAGGTGCTGAACATGACCATCCCGCGAGGTGCGACCGGTCCTACGGGACCGCAGCCGCCGTTGCAGAAGGTCACCACCCTTCCCGCTACCGGCGTAGTCGGGACTATCTACTGGATCGAAGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
bc5281fe2432ff6c4481e098cb9dfe766aed1f3f594d903330b461286a7ffcdf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7403
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence and characterization of the Rhodococcus bacteriophages REQ1, RGL3 and RER2 Petrovski,S. 2012-11-06 — GenBank