Protein

View in Explore
Genbank accession
YP_003358665.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANKPTQPVFPLGLVAEEQSTLAGILNTGTIEHGPDAVLTLPEGNASAGLPSSVRYNADSDEFEGFYENGGWLPLGGGGIRWEALPHASTATLTEGRGYLVDNSTGVSTVVFPSPTRIGDSVTVCDLYGKFSLYPLTIDPNGHPMYGSVEPMTLSTDSVSATFTWSGDARGWIVTAGVGLGQGRVYSRTIFTETVASDTAQVTLTTQPSIVDVYVDGKRLLESKYSLNGFNVDFSPSIPSGSELQVIQYVPIQLGDGSGGSGGGTVITWIYNSGSAVGGETEIELDVDAEDVSEIFIDGSRQQKGLGFTYDSVTKIITLADELEAGDEVVVVINGDPTLYNQIDRTPNEVARSVNVPNSQVILSSDTITKLDGKTVIYDVVAQKIWGLPSGIPTGASIVSVSGSNLSYAPGNVVVPLLPAPGSKDALEAYKGELLAGNTGLVGANAVVVTPQGTLAEMQYYVTPEQFSHLVTAGEYVDENTDFTLAVQGAVDYAASHPGVIVRGTEKVYGVGRVLVTVGVKVIDGLKLKCIVANTDTLLYSFVDTGHTDLQIRNCILNGNNNTRKGIIVSGVIRATIEKNYVYGLDGTGEAYGIRIGTTSTTSMNINNKISENVIEMPTDPWAGTGNYAICGIGMIGQITSLYGGLDTNAGVPLFPSTITLRDTIIEGNFISGGTHGVQGLGLFRTLITKNHIIGNTHRNINLSPNCQRVNVVGNLLIDGGSSGVNVAWGCRWINISGNHIQTSTAAVSPSDDAAIQLYKGVDQCTVSGNTILGDWKYSVYMGAGVTNVSVNANGLFAGSLASIAVESDWVLTADYPLAIYSSSRNPNTTPIAGDTGNINIGGNAYGAGSCAIYLAATNNKAMYNVNIHDEVINSVTSRPHVVYAYDAGTLMTDGSLTNIAARGATTSKYYLSRGRGAFNVIRDVTALDDPKGEVTVSGGTPSAVFGPNLYIASGTITDFTGAQSGDIINLRMGDGVVLTHNSTVMRLKGGVNATASGGLAIMTLQRRAGIWFEMSRNF
Physico‐chemical
properties
protein length:1019 AA
molecular weight: 106908,52560 Da
isoelectric point:4,72869
aromaticity:0,07360
hydropathy:0,03199

Domains

Domains [InterPro]
DC_1064
ATT
3–219
DC_1064 G3DSA:3.30.2020.50 DC_1445 IPR012334 IPR006626 IPR006626
G3DSA:3.30.2020.50
ATT
339–421
G3DSA:3.30.2020.50 IPR006626 IPR006626 IPR011050
IPR039448
ENZ
663–772
IPR039448 DC_1714
IPR006626
Unmapped
683–705
IPR006626 IPR006626
YP_003358665.1
1 1019
Architecture
ATT
ATT
STR
RBD
ATT 3-219 | ATT 335-421 | STR 422-873 | RBD 874-1019
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003358665.1
1 1019
Domain Start End Length (AA) Confidence
N-terminal 1 476 476 0,9965
Central domain 477 930 455 0,9932
C-terminal 931 1019 88 0,9799
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-476
Central
477-930
C-terminal
931-1019

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Ag3
[NCBI] 		637730 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Shigella boydii
[NCBI] 		621 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003358665.1 [NCBI]
Genbank nucleotide accession
NC_013693 [NCBI]
CDS location
range 127766 -> 130825
strand -
CDS
ATGGCTAATAAACCAACACAGCCTGTTTTCCCTCTCGGTCTGGTGGCTGAAGAACAGTCTACTTTGGCTGGTATCCTCAACACGGGTACGATTGAGCATGGACCAGATGCTGTCCTGACTTTACCCGAGGGTAATGCCAGCGCAGGCCTCCCGTCTTCTGTTCGCTACAATGCCGACTCCGACGAATTTGAGGGCTTCTACGAAAATGGTGGATGGTTGCCGCTGGGTGGCGGTGGTATCCGCTGGGAAGCCCTTCCGCATGCCTCTACGGCAACGCTCACTGAAGGGCGAGGCTATCTGGTAGACAACTCCACAGGCGTCTCTACGGTGGTGTTCCCTTCCCCTACGCGCATTGGCGATTCTGTTACAGTCTGTGACTTGTATGGAAAGTTCTCCCTGTATCCTCTGACCATTGACCCAAATGGTCACCCAATGTACGGCTCTGTAGAGCCTATGACTCTCTCCACCGATAGCGTGTCTGCGACCTTTACCTGGTCTGGAGACGCGCGTGGTTGGATTGTGACTGCTGGCGTCGGTCTTGGCCAGGGGCGCGTTTACAGTCGTACCATCTTCACTGAGACAGTTGCATCAGATACAGCTCAGGTAACTCTCACCACACAGCCGTCCATTGTTGATGTGTATGTTGACGGGAAGCGCCTGCTGGAGTCAAAGTATTCCCTCAATGGTTTCAATGTCGACTTCAGTCCATCAATCCCATCAGGTTCCGAGCTGCAGGTCATCCAATATGTCCCGATCCAGTTGGGCGATGGCTCCGGTGGTTCCGGCGGCGGTACGGTTATCACTTGGATATACAATAGCGGATCAGCTGTGGGTGGTGAAACTGAGATCGAGTTGGATGTCGATGCCGAAGATGTTTCTGAGATCTTTATCGATGGATCCCGCCAGCAGAAAGGCCTGGGCTTCACTTATGACTCCGTTACGAAGATCATCACGCTGGCCGACGAACTCGAAGCTGGTGATGAAGTTGTTGTCGTCATCAATGGTGACCCAACCCTGTACAATCAGATCGACCGTACACCAAACGAAGTGGCACGTTCCGTGAACGTACCGAATTCTCAGGTTATTTTGTCGTCCGATACCATCACCAAACTGGACGGAAAGACGGTTATCTATGATGTCGTTGCACAGAAGATCTGGGGTCTGCCTTCTGGTATCCCAACAGGCGCGTCCATCGTATCTGTGAGCGGAAGCAACTTGTCCTACGCTCCTGGCAACGTTGTGGTGCCACTCTTACCAGCCCCTGGCAGTAAAGACGCCCTTGAAGCGTACAAAGGCGAGTTGCTGGCCGGGAATACAGGTCTGGTGGGTGCAAACGCTGTCGTTGTAACACCCCAGGGCACTTTGGCCGAAATGCAATACTATGTCACGCCAGAGCAATTCTCTCATCTGGTTACGGCTGGTGAGTACGTCGATGAAAACACAGATTTCACTCTGGCTGTTCAGGGTGCTGTTGATTATGCCGCGAGCCATCCAGGAGTTATCGTCCGCGGTACAGAAAAGGTTTATGGTGTAGGCCGTGTTCTGGTGACAGTTGGTGTCAAAGTTATCGATGGTCTGAAGCTGAAGTGTATCGTTGCCAACACAGACACACTGCTCTACTCCTTTGTTGATACTGGGCACACCGATTTACAAATCAGAAACTGTATCCTAAATGGCAACAACAACACCAGGAAGGGTATCATCGTTTCCGGCGTTATCCGTGCGACTATTGAAAAGAACTATGTTTATGGTCTGGATGGGACTGGCGAGGCATACGGTATCCGTATCGGTACGACCAGCACGACTTCCATGAACATCAACAACAAAATCAGCGAAAACGTCATTGAGATGCCAACCGATCCTTGGGCGGGCACAGGCAACTATGCGATTTGTGGCATCGGGATGATCGGGCAGATCACATCTCTGTATGGTGGCCTAGACACCAATGCTGGGGTTCCGTTGTTCCCGTCTACGATCACGTTGCGCGATACCATCATTGAAGGAAACTTCATTTCTGGGGGCACCCATGGTGTTCAGGGGCTGGGTCTGTTCCGCACACTGATTACGAAGAACCACATCATAGGGAACACCCACCGAAACATCAACCTCAGTCCAAACTGCCAGCGAGTAAATGTCGTTGGCAACCTTCTGATTGATGGTGGTAGTTCTGGCGTCAACGTCGCTTGGGGGTGTCGTTGGATCAATATCTCTGGTAACCATATCCAGACTTCGACAGCGGCTGTATCTCCATCAGATGACGCAGCGATCCAGCTTTACAAGGGCGTTGACCAATGTACCGTCAGTGGGAATACAATCCTCGGCGACTGGAAATACAGCGTTTACATGGGCGCTGGCGTCACCAACGTGTCTGTCAATGCCAACGGCTTGTTTGCTGGTTCCTTGGCGAGCATCGCCGTGGAATCTGATTGGGTGTTGACCGCAGACTATCCTCTGGCGATCTACAGTAGTTCCCGTAACCCGAACACCACTCCTATCGCTGGCGACACAGGCAACATCAATATCGGCGGTAACGCGTATGGAGCGGGATCTTGCGCTATCTATCTGGCCGCCACCAATAACAAAGCAATGTACAACGTCAACATCCATGACGAAGTCATTAACTCGGTCACGTCTCGTCCGCATGTTGTTTATGCATACGACGCCGGAACCCTGATGACTGATGGTTCCCTGACCAACATTGCTGCTCGCGGGGCTACTACCAGCAAGTATTATCTTAGCCGTGGGCGCGGCGCTTTCAACGTGATAAGAGACGTCACTGCTCTTGATGATCCGAAAGGTGAAGTGACGGTGTCGGGTGGCACCCCATCTGCGGTGTTTGGTCCGAATCTGTATATCGCTTCAGGAACCATCACCGACTTCACTGGTGCACAATCGGGTGATATTATCAACCTGCGTATGGGTGATGGGGTTGTCCTCACTCACAATAGTACTGTGATGCGCCTCAAAGGTGGGGTGAACGCCACGGCTTCCGGTGGCTTGGCTATCATGACTCTCCAGCGCCGAGCTGGTATATGGTTCGAGATGTCTCGCAACTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d972c4435298df5c04ff2a8cbefb7bfb9f3b4a9408ee7a904f1e41f42bac1a21
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7360
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence of Vi-specific Shigella boydii phage phiSboM-AG3 Anany,H.E., Lingohr,E.J., Villegas,A., Kropinski,A.M., She,Y.-M. and Griffiths,M. 2011-05-19 — GenBank