Protein

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Genbank accession
YP_004322456.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,90
TSP
Evidence RBPdetect
Probability 0,77
TSP
Evidence RBPdetect2
Probability 0,58
Protein sequence
MALTRLKNVFTSKTGRCLYVNSDDFDASDSFDNRGNSPNRPFKSIQRALIEAARFSYKSGQFNDTFESFSIVLYPGDYVIDNRPGTNTSGQAFIPADIAELSASSDVDLVDDSGNINPNNVLYRFNSTEGGVIVPRGTSIVGMDLRKTKLRPLYVPDPTSGSIPGSAIFRVTGGCYFWQFSFFDGITSGVYKDPAQPSASSPPTFSHHKLTCFEYADGKNILSSTNGTDGNALSVSDLQLYYQKVAKAWEDIPDSTSVISADELQARVEENRIVGPNTAGPKTISSIVTDFVSTNVFTTTAEVTTSDAHGFSVGTPVLLEGVTGTDASRFNGSFFISAIPTPTTFRYIIKNPSTGAPSGNPTAGGSTVKVEVDNVDSSSPYIFNISLRSTWGMQGMHADGSKATGFKSMVVAQFTGVSLQKDDNAFIKWDGSAYIAGSHVDGDSIYKATYRNFHVKASNDSVIQAVSVFAVGFADHFVAESGGDQSITNSNSNFGSCALRAKGFKTAPFTQDKAGTITHVIPPQKLARTYAVVSGTTFTTTFDSVSVPATNNTHGIVAGDYVRFETADNIESYLVTTVNGTSGELTLNRGYRNLHGATAGSGKAAYKGTISEIPVGYVALDVQKIQDNASQGNSQWAVNQSGIQVGDSTINGGNAYLATAVAGAGATAAAGGGPVHTSGVVVDNQVTWAYIGAVNTRLYLYGYTSVATKPPYKLQGFSIGARKQDKIYVSLIDGSTQSTFAALVSPDGSASPTDASYTNVTGQGFTPGDTNHPLQYDTYHQNWYLRVTAATSGDSTVNGTTGYEGIHYHLGNETFYANSLFTGSSYTQRIADNRSSRDRTYRIRYTVDNSASLSREPINGYVFQVRNSVTNYNNVYYIYDIEVAQELKKSVQDGIYYVTVLKGSISPTNGNLSQFSFAQNINNLYPTLDKDNPTEDPNAATSVASNITVGLVETTNGSGIEDLSLSITKEAVNTYIEEGNNSYTNSGGSGNPAQTNYITLEARDGEASEVDKTLRMVQVNNTGGTATELRRPSILRSGNHTFEYVGFGPGNYSTGLPSVQNRVLTEAETLLAQSQKEDGGIAFYSGLNSNGDLFIGNTRISAVTGEEASLDTPSLSIVGETANLRPVFDEIIVRDKITVENTQLTSVFKGSVEVNEDVTITKGLEAADMTIKGEAANNQATKKFDVTVGTPGTTNAANTGDISWIGNIGNGSYLGWYWTGAAWAKFGLTDTGNLAITGGSASGSTWTDGAGDLQLKNGLGLDIQSTGTLNVNSGATTLGGNLTVSGTSEFNGTVDVDANFAVRSGTTDKFTVASSTGNVQTDGTLTVAGETTLQGNVNIGNGSGDNITINGRIDSNLDPDANDTYDVGTSGRKWKDGYFAGTVTAPTFSGNVDVSTGTSTFNNVTVNGTLSAGNLTGNADTATDLAINATQQLVIQTGNNATSTLSSGTNNYILTSNGSGSAPSWQQNFNGNAETATEVYVTEYTNDSTDRPLVFAYTSNTANSANRGLGKDHSHLVWNGNDNKLKCPNADFSGTITAGTFGTSSQNAYGTRTVGTGNPSGGSNGDIHYKI
Physico‐chemical
properties
protein length:1571 AA
molecular weight: 165915,19980 Da
isoelectric point:4,87118
aromaticity:0,09039
hydropathy:-0,32998

Domains

Domains [InterPro]
DC_0066
STR
1–1568
DC_0066
YP_004322456.1
1 1571
Architecture
STR
STR 1-1568 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004322456.1
1 1571
Domain Start End Length (AA) Confidence
N-terminal 1 66 66 0,8929
Central domain 67 303 238 0,9597
C-terminal 304 1571 1267 0,5350
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-66
Central
67-303
C-terminal
304-1571

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-HM1
[NCBI] 		445700 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004322456.1 [NCBI]
Genbank nucleotide accession
NC_015280.1 [NCBI]
CDS location
range 22109 -> 26824
strand +
CDS
ATGGCACTTACTAGACTAAAAAACGTCTTTACATCAAAAACAGGACGTTGCTTATACGTCAACTCTGATGACTTCGATGCATCAGATAGTTTTGACAATAGAGGTAACTCTCCTAACCGTCCTTTTAAGAGTATACAAAGGGCGTTAATTGAAGCAGCGAGATTTTCATATAAAAGTGGACAGTTTAACGATACGTTTGAGTCATTTAGTATCGTATTATATCCTGGCGACTATGTTATTGATAATAGACCAGGCACAAATACATCTGGACAAGCATTCATCCCTGCTGATATCGCTGAATTAAGTGCATCTAGCGATGTTGATCTAGTAGATGATAGTGGTAATATAAATCCAAACAACGTATTATACAGATTTAACTCAACAGAAGGTGGTGTAATAGTTCCTAGAGGAACATCTATCGTAGGTATGGACTTACGTAAGACTAAACTACGTCCATTATATGTTCCCGATCCTACATCTGGATCAATACCTGGCAGTGCTATCTTCCGTGTTACAGGTGGTTGTTATTTCTGGCAGTTCTCATTCTTTGATGGTATAACATCTGGTGTATATAAAGACCCTGCACAACCAAGTGCATCTTCACCTCCAACATTCTCACACCATAAACTTACATGTTTTGAGTATGCTGACGGTAAAAATATATTAAGCAGTACAAATGGCACAGATGGTAATGCACTATCAGTTAGTGACTTACAATTATACTATCAAAAGGTAGCAAAAGCATGGGAAGATATTCCTGATAGCACAAGTGTTATATCTGCTGACGAATTACAGGCACGTGTCGAAGAAAACAGGATCGTAGGTCCTAACACAGCAGGTCCTAAAACAATCAGTAGTATTGTTACTGACTTTGTTAGCACAAACGTATTCACAACAACAGCAGAGGTCACAACATCTGATGCTCACGGGTTCTCAGTTGGAACTCCCGTATTACTTGAGGGTGTCACAGGAACTGACGCATCAAGATTTAATGGATCGTTCTTTATCAGTGCGATACCAACACCAACAACATTTAGATATATTATTAAAAATCCTAGCACAGGTGCACCATCTGGTAACCCAACTGCGGGTGGATCAACGGTGAAAGTTGAAGTTGACAACGTTGACAGTTCATCACCATACATCTTTAATATATCTCTACGTTCTACATGGGGTATGCAAGGTATGCATGCTGATGGTAGTAAAGCAACTGGATTCAAATCCATGGTTGTTGCTCAGTTTACTGGTGTATCACTGCAGAAAGACGACAATGCATTCATTAAGTGGGACGGATCTGCATATATTGCAGGATCACACGTTGATGGGGATAGTATATACAAAGCAACATATAGAAACTTCCATGTGAAGGCATCTAACGACTCTGTTATACAGGCAGTGTCAGTGTTTGCTGTTGGATTTGCTGATCACTTTGTTGCTGAGTCTGGTGGTGACCAGTCAATTACTAACTCTAACAGTAACTTTGGTTCATGTGCATTAAGAGCAAAAGGATTTAAGACTGCACCATTTACACAGGATAAGGCAGGAACTATCACACACGTGATACCTCCACAGAAACTAGCAAGAACTTATGCAGTCGTAAGTGGAACTACATTTACTACTACGTTTGATAGTGTCAGTGTACCTGCTACTAATAATACCCATGGTATCGTAGCTGGTGATTATGTAAGATTTGAGACTGCTGATAATATAGAATCATATCTAGTCACTACAGTCAATGGAACAAGTGGCGAATTAACATTAAACAGAGGATATAGAAACTTACATGGTGCAACAGCTGGTTCTGGTAAGGCAGCATACAAAGGAACTATCAGTGAAATACCTGTTGGTTATGTTGCACTTGATGTTCAAAAAATACAAGACAACGCATCACAAGGTAACAGTCAGTGGGCAGTCAACCAATCTGGTATACAAGTTGGTGACTCAACAATTAATGGTGGTAATGCATATCTAGCAACCGCAGTTGCAGGAGCAGGAGCTACAGCAGCAGCAGGAGGAGGTCCTGTTCATACATCTGGAGTCGTTGTTGATAACCAAGTTACATGGGCATATATTGGTGCAGTCAACACAAGATTATATCTCTATGGTTATACATCTGTTGCAACTAAACCTCCATATAAACTACAAGGTTTCAGTATTGGTGCACGTAAACAGGACAAGATATATGTGTCATTGATTGATGGATCAACACAATCAACCTTTGCAGCATTAGTATCTCCTGATGGTAGTGCATCACCTACAGATGCATCATATACTAACGTAACTGGGCAAGGATTTACACCTGGCGATACAAATCATCCACTACAATATGACACATATCATCAAAACTGGTATTTAAGAGTAACAGCAGCAACATCTGGTGATTCAACTGTCAATGGAACTACTGGATACGAGGGTATTCACTATCATCTAGGTAATGAGACATTCTATGCCAACTCATTATTTACTGGATCATCATATACACAACGTATTGCTGATAACAGATCATCTAGAGATAGGACATATAGAATACGTTACACTGTAGATAACTCTGCAAGTCTATCAAGAGAACCTATCAATGGTTACGTATTCCAAGTAAGAAATAGTGTCACAAACTATAATAATGTTTACTACATCTATGATATAGAAGTAGCACAAGAACTTAAAAAGTCAGTGCAAGATGGTATTTACTACGTTACAGTATTAAAAGGTAGTATATCACCTACAAATGGTAACTTAAGTCAGTTCTCATTTGCACAGAACATTAATAACTTATATCCTACCCTAGATAAGGACAACCCAACTGAAGATCCAAACGCAGCAACATCTGTTGCAAGTAATATTACTGTTGGTTTAGTTGAGACTACTAATGGATCTGGAATAGAGGATCTATCTTTATCCATCACTAAAGAAGCGGTAAACACATATATTGAGGAAGGCAACAACTCATATACAAACTCTGGTGGATCTGGAAACCCTGCACAAACAAACTATATCACTCTTGAAGCAAGAGATGGTGAAGCATCTGAAGTCGATAAGACTTTACGTATGGTACAGGTTAATAATACAGGTGGTACAGCAACTGAACTTAGACGACCTAGTATTCTAAGATCTGGTAACCACACATTTGAATACGTTGGTTTCGGACCTGGTAACTATTCAACTGGTTTACCTTCAGTTCAGAACAGAGTTCTTACCGAAGCTGAGACATTATTGGCACAGTCACAGAAGGAAGACGGTGGTATCGCATTCTACTCTGGTCTTAACAGTAATGGTGACTTGTTTATTGGTAACACTAGAATCTCTGCTGTTACTGGTGAAGAAGCATCACTTGATACTCCATCACTATCAATCGTTGGTGAGACTGCAAACTTACGTCCTGTATTTGATGAGATCATCGTCAGAGATAAGATTACAGTTGAGAACACACAGTTGACCAGTGTATTCAAAGGTAGTGTTGAAGTTAACGAAGACGTAACAATAACTAAAGGTTTAGAAGCTGCTGATATGACAATCAAAGGCGAAGCAGCAAATAACCAAGCAACCAAAAAGTTTGACGTTACAGTAGGAACACCTGGCACAACTAACGCAGCAAACACAGGAGATATATCATGGATAGGAAATATTGGTAATGGTAGTTACCTTGGATGGTATTGGACTGGTGCAGCATGGGCAAAGTTTGGACTAACCGATACTGGTAACTTAGCAATTACAGGTGGTAGTGCATCTGGTTCTACATGGACTGATGGTGCAGGAGACTTACAACTTAAAAACGGACTAGGACTTGATATACAATCAACTGGAACACTTAATGTTAACAGTGGTGCTACTACACTTGGTGGTAATCTGACAGTCTCAGGTACATCTGAGTTTAATGGCACAGTAGATGTTGATGCAAACTTTGCAGTCAGATCTGGCACGACTGATAAATTTACAGTCGCATCAAGCACAGGTAATGTTCAGACTGATGGAACATTAACAGTTGCAGGAGAGACTACTTTACAAGGTAATGTTAATATAGGTAATGGATCAGGTGACAATATAACAATTAATGGTAGAATAGATTCAAACCTAGATCCAGATGCCAACGATACTTATGATGTAGGAACTAGTGGACGTAAATGGAAAGACGGTTACTTCGCAGGAACAGTTACTGCACCAACATTCTCTGGTAACGTAGATGTATCTACTGGAACTTCTACATTTAATAACGTAACAGTCAACGGAACGTTATCTGCAGGAAACTTAACTGGTAATGCTGATACAGCAACTGATCTTGCTATCAATGCAACACAGCAACTTGTTATTCAAACAGGTAACAATGCAACATCTACATTATCATCTGGAACTAACAACTATATCCTAACATCTAACGGATCAGGATCAGCACCATCATGGCAGCAAAACTTTAATGGTAATGCTGAGACTGCAACAGAGGTATATGTTACTGAATACACTAACGATTCTACTGATAGACCACTTGTATTCGCATACACTAGCAACACTGCTAACTCTGCAAACAGAGGTTTAGGAAAAGATCATTCACATCTAGTGTGGAATGGTAATGACAACAAACTAAAATGTCCTAATGCTGATTTTTCTGGAACTATTACAGCAGGAACGTTTGGAACATCATCACAAAACGCATATGGTACAAGAACTGTAGGCACAGGTAACCCCTCTGGTGGAAGCAATGGAGATATCCACTATAAAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85eedd550180fa68465782c129ae99f500803bc4fc820c144c1ccec063240644
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7809
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage M4-247 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank