Protein

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Genbank accession
YP_008125201.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MSEFRRAFRASGLDASGQNVINVANPRADELFDGVNLGYFVDENTVQEYDATRSHYKLDFIVEYNQRLYKNIIEVTAPEPFDVNKWKKMRTDPEWEDTDTSVGSNVGDFLFLTASSAVTVTLPPSPVEGDTVTIKDGKGVLSAYPCTVAAGGGLSIQYYGYTGAIQSVTSVLFNRPNATIYFVFNGIAWTYQIDQEKYETYIDAGHSTQQGSYLTNGGYFTNPGETVTFDGSVKKIAISLPRNPNYGDTVHLKDVAYLENQTSIQIGVHPSSTGQIVQDPISGVRSSVISLDTIGGADITFIDDLGTGVWLVTVANNPHLWNYVGESSTVSLKPRTRYAIEIADAVSEMFITLPEKPVDGDWIEISHNKTAHKTVTVQVHPNFGDDDPGHGADEYKVFLDFETYRYQKYRHYVDFVPFFVESFEISDYDSGYSFVLYYDGTRKVWSFGNIATRIDVADELHRKRPGIVPLADPTEALAHGIEYAHPEDVAKPWADQSPLKDNVITVETLDARRAAEDQVGMARIASLTTSEALEESRSGALVRYPDSNFRHDIVVTPRSLNARTATETRRGVVEIATQTETRSTTNDVQVLSPKKFHAAQAEENLTGVAELTKASNNIAANGTVSSTANMRSDRSTNGLVDTVYDKTDHLRIVTPKMLDEYRATENQPGTLWVAKSTELRINDSTVDDAIITPKKLAAWKASDTIRGIARRATQTEANAISGSGESWNNVFITPETLYNRSATETRRGVAEIATQVEVDAGVLDTHIVSPLKFKTWLAYDHFTSDGVLQGAGYGVSGISHTGDIWNGINLEIALATETQRGTLEVATQAEANANTGGSDVHIITPAKLNARRATETLAGIAELATTAEIDSATSDVTIVTPSKLQHWTRNSAASRADEGRYGTVQLATPAESFVGNDTVGSTQPYTSYLRVPYAVSPYGLHYALRNYLPLHATADNSELLDGLDSTQFARSDESDVINGIYTFTQNDLIVRGDSPRFTLIETDQSNKEWNILVSLSGLSIREDGSATVRQLFGADGDTSFQGGSGIVKINNGAADTNSIRLYVAGSIHEGSGTENVDATYATYSSPAAGSLRQKYLGINNVAKAAEKWVTARTVTLTGDLTGNFTIDGSGNVSTNVQVNDNSHNHSGENITSGTIANARLIKSSRTSQGIVQVTNDVRTADPVNASDPHQALSAGAGKTLSERIDLFTPDGGTGESVKYRDYIQVGTVRMSTNNQGVLEFTFGHAI
Physico‐chemical
properties
protein length:1246 AA
molecular weight: 135468,81320 Da
isoelectric point:4,96320
aromaticity:0,08347
hydropathy:-0,35626

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008125201.1
1 1246
Domain Start End Length (AA) Confidence
N-terminal 1 384 384 0,8754
Central domain 385 769 386 0,0440
C-terminal 770 1246 476 0,2571
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-384
Central
385-769
C-terminal
770-1246

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage nt-1
[NCBI] 		115992 Uroviricota > Caudoviricetes > Pantevenvirales > Mylasvirus > Mylasvirus persius
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008125201.1 [NCBI]
Genbank nucleotide accession
NC_021529 [NCBI]
CDS location
range 160512 -> 164252
strand -
CDS
ATGTCGGAATTCCGCAGAGCATTTCGTGCGTCAGGTCTTGATGCAAGTGGTCAAAACGTAATTAACGTAGCAAACCCACGAGCAGATGAATTGTTCGACGGAGTTAACCTTGGTTACTTTGTCGATGAAAACACAGTTCAAGAGTATGATGCTACGCGATCTCACTACAAATTAGACTTCATCGTTGAGTATAATCAGCGTTTATACAAAAACATTATCGAAGTCACTGCGCCTGAACCATTTGATGTTAATAAATGGAAGAAGATGCGTACCGACCCAGAATGGGAAGATACAGATACTTCAGTCGGTTCTAACGTAGGTGATTTCTTATTCCTTACTGCAAGCTCAGCAGTAACCGTAACTCTACCACCATCGCCAGTAGAAGGCGATACTGTTACAATCAAAGATGGAAAAGGCGTTCTTTCTGCATACCCATGTACTGTAGCAGCAGGCGGTGGGTTATCTATCCAATATTACGGATACACTGGGGCAATACAATCGGTTACATCAGTTCTATTCAATCGACCAAACGCGACAATCTACTTCGTGTTTAACGGCATTGCATGGACATATCAAATCGATCAAGAAAAATACGAAACATACATCGACGCTGGTCACTCAACACAGCAAGGGTCGTATTTAACAAATGGTGGCTACTTCACAAATCCTGGTGAAACTGTTACGTTTGATGGGTCTGTCAAGAAGATAGCGATTTCTCTACCTCGTAACCCGAACTATGGTGATACTGTCCATCTAAAAGACGTTGCGTATCTTGAGAATCAAACATCAATTCAGATTGGTGTTCATCCGTCGTCAACTGGTCAGATAGTTCAAGACCCAATTTCAGGCGTAAGAAGTTCAGTCATAAGTCTTGACACTATCGGCGGCGCGGATATTACATTCATCGACGATCTAGGCACAGGCGTATGGTTAGTTACTGTTGCGAACAATCCTCACTTGTGGAACTACGTCGGTGAATCGAGCACGGTTTCTCTTAAACCACGTACTCGTTACGCGATTGAAATTGCAGACGCTGTTTCAGAAATGTTCATCACTCTACCTGAAAAGCCAGTAGATGGTGACTGGATTGAGATTTCACACAACAAGACAGCACATAAAACTGTAACTGTTCAAGTACACCCGAATTTCGGTGATGATGATCCTGGTCATGGGGCTGATGAATACAAAGTATTCTTGGATTTTGAGACATATCGTTATCAGAAATACCGTCACTATGTTGACTTTGTACCGTTCTTTGTAGAATCGTTCGAAATTAGTGACTACGACAGTGGCTACTCGTTCGTTCTGTACTACGATGGCACACGCAAAGTATGGTCGTTCGGTAACATTGCAACTCGTATCGACGTTGCAGATGAACTACATCGTAAACGCCCAGGTATTGTGCCACTGGCTGACCCGACAGAAGCACTTGCACACGGTATTGAATACGCACACCCAGAAGACGTTGCGAAGCCATGGGCTGACCAAAGTCCTCTGAAAGACAACGTAATCACCGTTGAGACTCTTGACGCACGTCGTGCAGCAGAAGATCAAGTCGGTATGGCTCGTATCGCTTCGTTGACAACTAGCGAGGCACTTGAAGAATCACGTTCTGGCGCTCTTGTACGTTACCCAGATTCAAACTTCCGTCATGACATTGTAGTGACACCTAGAAGCTTGAACGCACGTACAGCGACTGAAACACGTCGTGGTGTTGTTGAGATTGCAACTCAAACTGAAACACGTAGCACAACAAACGATGTCCAAGTACTGTCACCTAAGAAGTTCCATGCGGCACAAGCTGAAGAGAACTTGACTGGTGTTGCTGAGCTAACAAAAGCATCAAATAACATTGCTGCTAACGGCACAGTTTCATCAACTGCGAACATGCGTTCAGACCGTTCTACAAATGGCCTAGTTGATACAGTTTACGATAAGACAGATCATCTACGTATCGTAACACCGAAGATGCTAGATGAATATCGAGCAACTGAGAATCAGCCGGGTACATTGTGGGTTGCTAAGTCAACTGAGCTTCGTATTAACGACTCAACAGTTGATGACGCGATAATCACGCCTAAGAAATTAGCAGCGTGGAAAGCAAGTGATACTATTCGTGGTATTGCTCGTCGTGCGACTCAAACTGAAGCAAATGCGATCAGTGGTTCAGGTGAATCATGGAACAACGTATTCATCACTCCTGAAACATTGTACAATCGTTCAGCGACTGAAACACGTCGTGGTGTAGCTGAGATTGCAACACAAGTTGAAGTTGATGCTGGTGTTCTTGACACGCATATTGTTAGTCCGCTGAAATTCAAAACGTGGCTTGCGTACGATCATTTCACAAGTGACGGTGTATTGCAAGGGGCGGGTTATGGCGTATCTGGTATCTCACATACGGGTGATATCTGGAATGGCATTAACTTAGAAATTGCACTTGCGACTGAAACTCAACGTGGTACGCTTGAAGTTGCGACGCAAGCTGAAGCAAATGCAAATACTGGTGGTTCTGATGTTCACATCATCACACCAGCTAAGCTGAATGCACGTCGTGCAACTGAAACTCTAGCAGGTATTGCAGAACTTGCAACAACTGCTGAAATTGATTCAGCTACTAGTGATGTAACAATCGTAACACCATCTAAATTGCAGCATTGGACTCGCAATTCAGCAGCTTCACGTGCAGATGAAGGCAGATATGGTACTGTTCAGCTTGCAACACCTGCTGAATCGTTCGTCGGTAATGACACTGTTGGTTCTACGCAGCCATATACGTCGTACTTACGTGTTCCGTATGCAGTATCACCGTATGGGTTACATTACGCATTACGCAACTACTTGCCGTTACATGCAACTGCTGACAACTCAGAATTGCTAGACGGTCTTGATAGCACTCAGTTTGCACGTAGCGACGAATCAGATGTGATTAATGGCATCTACACGTTCACGCAGAATGATTTGATTGTTCGCGGTGATTCGCCAAGATTCACACTAATTGAAACAGATCAATCTAATAAAGAATGGAATATTCTTGTCAGTCTTTCGGGATTGAGCATCCGAGAAGATGGATCAGCAACTGTTCGCCAATTGTTTGGCGCGGATGGTGATACTTCGTTCCAAGGCGGATCTGGTATTGTTAAAATCAACAACGGTGCAGCCGATACCAACTCAATTCGCTTGTATGTTGCAGGTTCAATTCATGAAGGTAGCGGAACAGAAAACGTTGATGCAACATACGCGACTTACAGCAGCCCAGCAGCAGGATCACTACGTCAGAAGTACTTGGGTATTAACAACGTAGCTAAGGCGGCTGAGAAGTGGGTTACAGCGCGTACAGTGACACTAACTGGCGACTTGACTGGCAACTTCACAATTGACGGAAGCGGAAACGTTTCAACAAACGTGCAAGTTAACGACAATAGCCACAATCACTCTGGTGAGAACATCACTAGCGGTACAATTGCAAACGCTCGACTAATCAAGTCAAGTCGTACAAGTCAAGGTATCGTTCAAGTAACAAATGATGTTCGTACAGCAGACCCAGTGAATGCTTCTGACCCGCATCAAGCTCTTTCGGCAGGTGCAGGTAAGACACTTTCAGAACGCATCGACTTGTTCACACCAGACGGTGGTACTGGTGAGAGTGTTAAATACAGAGACTATATTCAAGTTGGCACAGTAAGAATGTCAACGAACAATCAAGGCGTGCTGGAGTTCACTTTCGGTCACGCGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd2171479e1746059321b3eb77fba022a0d75ca8481a3d23074bf827ceaffbb2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5228
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage nt-1 Henn,M.R., Krisch,H.R., Comeau,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank