Protein

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Genbank accession
YP_009042301.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MIELLMAGGKKGVPVDMDDVNADEALVSASAAMMPGQSRGGTLGGSSPTSTAAVAIGYWNGKIYVLKADGLHTFNVSDMAYSGMVPGVAGRTIPLNSASYLHKGVLYFGQGRTKTGVIESLNLETGVYKTYPSLPYDYGAIYVDDDYVYSIANVYKSTGFSSNAIRRCRIDGSAWEDVILSGAFSHGVSGGDATLMGGFVYITGGGSIKNTSEGDGSPYVDVLRVDLTNLQISTVQITSPGFTLYDMPSCVWKGVIYTVQQSSTVLNQFDILTGSKTTASVPTNQFHCPCLRVGDLFFWLSGYSSKTIYQYKLPGGL
Physico‐chemical
properties
protein length:317 AA
molecular weight: 33719,75050 Da
isoelectric point:5,52938
aromaticity:0,10726
hydropathy:0,04290

Domains

Domains [InterPro]
IPR015915
STR
46–314
IPR015915
IPR015915
STR
102–307
IPR015915
YP_009042301.1
1 317
Architecture
STR
STR 46-314 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009042301.1
1 317
Domain Start End Length (AA) Confidence
N-terminal 1 36 36 0,8391
Central domain 37 235 200 0,5509
C-terminal 236 317 81 0,8638
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-36
Central
37-235
C-terminal
236-317

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR8
[NCBI] 		1327934 Uroviricota > Caudoviricetes > Vequintavirinae > Certrevirus CR8 >
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009042301.1 [NCBI]
Genbank nucleotide accession
NC_024354 [NCBI]
CDS location
range 50332 -> 51285
strand -
CDS
ATGATCGAGCTATTAATGGCAGGAGGGAAGAAAGGGGTGCCTGTGGACATGGATGACGTTAATGCTGACGAGGCATTAGTGTCGGCATCAGCCGCCATGATGCCGGGCCAATCCCGGGGTGGAACTTTGGGAGGCTCTTCTCCTACCAGCACAGCAGCCGTCGCGATCGGGTATTGGAATGGAAAAATCTATGTTCTGAAAGCAGATGGTTTGCACACCTTCAATGTGAGCGACATGGCATACTCAGGCATGGTCCCTGGTGTGGCTGGAAGAACCATACCGTTAAATAGCGCCAGTTATCTCCATAAGGGAGTTCTTTACTTCGGACAAGGCAGGACAAAGACAGGGGTAATCGAATCCCTGAACTTGGAGACGGGTGTGTACAAAACTTATCCCTCCTTGCCTTATGATTATGGGGCTATTTACGTAGATGACGATTACGTGTACTCTATTGCCAATGTCTACAAGTCCACCGGGTTTTCATCGAATGCGATCCGCAGATGCCGGATAGATGGCTCGGCTTGGGAAGACGTAATTCTTTCCGGTGCTTTTTCTCACGGGGTCTCTGGTGGGGACGCCACTTTGATGGGCGGGTTTGTTTATATAACCGGAGGGGGTTCAATAAAGAACACAAGTGAGGGTGACGGCTCTCCATATGTGGATGTCCTCCGTGTGGATTTGACAAACCTTCAGATCTCAACAGTACAAATTACAAGCCCGGGATTTACCCTTTATGATATGCCGTCTTGCGTATGGAAAGGGGTTATATATACAGTCCAACAAAGTAGTACGGTACTTAACCAGTTCGATATCTTGACAGGTAGTAAAACAACAGCTTCTGTCCCAACAAACCAGTTCCACTGCCCATGTTTAAGGGTGGGTGACTTGTTCTTCTGGCTATCTGGTTATAGTTCGAAGACGATCTATCAATACAAATTACCGGGAGGTTTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
aa81200b71493f37c4903f7c680bf7e2c39e6dfa3b32bde885b3591a102798e3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7742
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR8 Kim,Y., Shin,H. and Ryu,S. 2012-06 — GenBank