Protein

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Genbank accession
YP_009784788.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MEFPIKLETGVTLTAAKDPVWGDRDGTFINCVVTLEGGPFEEPTEVPFTATPTDYMAHGRDLFDYFKDSAGPWVRPDVTIEDLQADFDKIWPDVMLGLADQETIDLAKNLRVQIKAMS
Physico‐chemical
properties
protein length:118 AA
molecular weight: 13194,76800 Da
isoelectric point:4,20713
aromaticity:0,10169
hydropathy:-0,22373

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa17
[NCBI] 		1629654 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ghunavirus
Host Pseudomonas syringae pv. actinidiae ICMP 18800
[NCBI] 		1104681 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784788.1 [NCBI]
Genbank nucleotide accession
NC_047747.1 [NCBI]
CDS location
range 36717 -> 37073
strand +
CDS
ATGGAATTTCCTATCAAGCTCGAAACAGGGGTGACCCTGACTGCCGCAAAGGACCCCGTATGGGGCGACCGTGATGGCACGTTCATCAACTGCGTGGTGACTCTTGAAGGCGGTCCTTTCGAGGAACCTACTGAAGTTCCGTTCACCGCAACACCGACAGACTACATGGCTCATGGCCGCGACCTGTTCGATTACTTTAAGGACTCTGCGGGACCGTGGGTTCGCCCAGATGTCACCATCGAAGACTTACAAGCTGACTTCGACAAAATCTGGCCCGACGTGATGTTGGGTCTGGCCGATCAGGAAACCATTGACCTCGCTAAGAATCTGCGCGTTCAGATCAAGGCGATGAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8e8aa4b26a4220636778fe716a723748ab9ca9818925c8fbd98709378472204
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8001
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic, proteomic and structural analysis of a T7-like bacteriophage of the kiwifruit phytopathogen Pseudomonas syringae pv. actinidiae Lopez Acedo,E., Frampton,R.A., Chen,D., Tong,B., Young,V., Taylor,C., Easingwood,R., Pitman,A.R., Kleffmann,T., Bostina,M. and Fineran,P.C. 2015 — GenBank