Protein

View in Explore
Genbank accession
YP_007672702.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,72
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
LKNRAAIWKVVNEANSEIQIKATENAAVELYYDHSKKLETYASGCYVYGKVALQGSEDGNAIIEMFADEGDDAADKYQLASITNGNWEVQNYSSGSAWETNIRATGGGAVSLFYNDAKKIETAGGGINITGDVYHNTDNGSAYFGAGNDLRIYHDGGNSFLANTGGNLYIRNNTAGTPVFYLQVGDSNEDALKATFNGAVELFYNNVRKLYTDNGGVVVQGNLYLSDADDRKAIFGAGQDLQIWHDGSHSHIQHENTGNLYVLCKSGQINFETASETMTQMIPNGKVNLYYDNVKKFETDSYGAKVIGNLVVGTDAGELLFTNPDGHSPKFKENGGALEVWTNNAKRWTVESNGNNVYEDDVKIFFGSGNDLRLWHDGSSSFIKNYTGDFIIENTGTGNVQINPDSTGTGILLTKDAGVDLYYDGAKKFETTSNGATFTGTSLVTFAGDDNRYIDFEGNGNNRSVTFRSRDGGANDSFAQFTANGSVYLYYDNNLKLSTVSGGVRIDNGNLLLDRDNAYIKLGASDDLQIYHDGSNSYIKQVSGATGDLLIFADGHDIELIPKSGEPGLNVKPDGAVELYYDGIKKCETVSDGLLLQGVEGGNAAITMESDEGDDHDDKWQIQAASDHTFHLKHKAGNSWKTAWYTWTDSNIGYPVFRASKGGIRFDDGLDNVNSDQWNAYGGDGHAHRTAGQAYITADDHMRFRKNGNAENKRFDLRTDTGNGQAQNDWQDDQFDFAEFFEWSDGNPNGEDRIGHTVAVDGLTGKIKIAAEGDAVIGVVSGTAAFTANCAAMGWHGKYIRDEWGRYRFDLVKDEDGNQLYSDLNKKHEKITLVENPDWDQTKEYYSRDERKEWDKIGIIGQCYVRKAAVIPSSWIKLKEIDSTKDFYLIK
Physico‐chemical
properties
protein length:891 AA
molecular weight: 97993,81660 Da
isoelectric point:4,77012
aromaticity:0,11111
hydropathy:-0,60337

Domains

Domains [InterPro]
DC_0955
STR
1–98
DC_0955 DC_0955 DC_0955 IPR021865
DC_0955
STR
218–359
DC_0955 DC_0955 IPR021865
G3DSA:2.40.300.10
RBD
736–812
G3DSA:2.40.300.10
YP_007672702.1
1 891
Architecture
STR
STR
CHP
RBD
CHP
STR 1-98 | STR 132-511 | CHP 705-735 | RBD 736-812 | CHP 813-866 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007672702.1
1 891
Domain Start End Length (AA) Confidence
N-terminal 1 785 785 0,0022
Central domain 786 880 96 0,3412
C-terminal 881 891 10 0,3083
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-785
Central
786-880
C-terminal
881-891

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSP10
[NCBI] 		885867 Uroviricota > Caudoviricetes > Autographivirales > Tangaroavirus > Tangaroavirus PSSP10
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007672702.1 [NCBI]
Genbank nucleotide accession
NC_020835 [NCBI]
CDS location
range 44650 -> 47325
strand -
CDS
TTAAAGAATAGAGCAGCTATTTGGAAAGTTGTTAATGAAGCTAATAGTGAAATACAAATTAAAGCTACAGAAAATGCAGCAGTAGAACTCTATTATGACCACTCAAAGAAGCTGGAAACCTATGCTTCTGGATGCTATGTTTATGGTAAAGTTGCACTTCAAGGTTCTGAGGATGGTAATGCTATTATCGAAATGTTTGCTGACGAAGGTGACGATGCAGCAGATAAATACCAATTAGCATCTATTACTAATGGTAATTGGGAAGTACAAAACTATTCAAGTGGAAGTGCTTGGGAAACAAATATAAGAGCAACTGGTGGTGGAGCAGTATCACTTTTTTATAATGATGCTAAGAAGATTGAAACCGCAGGTGGTGGTATTAACATCACTGGCGATGTTTATCATAACACTGATAATGGTAGTGCTTACTTTGGCGCTGGTAATGATTTAAGAATCTATCACGATGGAGGAAATAGCTTCCTAGCAAATACAGGTGGTAATTTATATATAAGAAATAACACTGCTGGTACTCCAGTATTTTATTTACAGGTTGGTGATTCAAATGAAGACGCTCTAAAAGCTACATTTAACGGAGCCGTAGAACTCTTTTATAACAATGTTAGGAAACTATACACAGATAACGGTGGTGTAGTTGTTCAAGGAAACTTATATCTTTCAGATGCTGATGACCGCAAAGCTATATTTGGAGCAGGGCAGGATCTACAAATTTGGCATGACGGCAGCCACTCGCATATTCAACACGAAAACACTGGAAACCTATATGTTCTTTGTAAGTCTGGTCAGATAAACTTTGAAACTGCTTCTGAGACAATGACTCAGATGATACCTAATGGTAAAGTCAATCTCTATTACGACAACGTTAAGAAGTTTGAGACAGATAGTTACGGAGCAAAGGTTATTGGCAACTTAGTTGTTGGTACTGATGCTGGAGAACTACTATTTACTAATCCAGATGGTCATAGTCCTAAGTTTAAGGAAAATGGTGGTGCATTAGAGGTTTGGACTAATAATGCAAAACGATGGACAGTTGAATCTAACGGTAATAATGTTTACGAAGATGATGTAAAAATATTCTTTGGTAGTGGAAATGATTTAAGACTTTGGCATGATGGCTCTTCTTCTTTTATAAAAAATTACACTGGTGATTTTATAATTGAAAACACAGGAACAGGTAATGTTCAAATAAATCCTGATAGTACGGGAACTGGTATTCTTCTTACTAAGGATGCAGGTGTTGACCTATATTACGACGGTGCTAAGAAGTTTGAGACAACGAGTAATGGAGCTACTTTTACGGGAACAAGTCTCGTTACATTTGCTGGAGATGATAACAGGTACATTGATTTTGAAGGTAATGGTAATAATAGAAGCGTTACGTTCAGGAGTAGAGATGGTGGTGCGAATGATTCTTTTGCACAATTCACTGCCAATGGCTCAGTATATCTCTATTACGATAATAATCTAAAGCTATCTACAGTTTCTGGTGGAGTTAGAATAGACAACGGTAATCTTCTTTTAGATAGAGATAATGCTTATATAAAACTCGGTGCTAGTGATGATTTGCAGATTTATCACGATGGAAGCAATAGTTATATAAAACAGGTTAGTGGTGCTACTGGTGATTTATTAATCTTTGCAGATGGTCACGACATAGAACTTATACCAAAATCTGGTGAGCCTGGTCTAAATGTTAAACCTGATGGAGCAGTCGAGCTCTATTACGACGGTATTAAAAAATGTGAAACAGTTTCAGATGGATTATTACTGCAGGGTGTTGAAGGTGGTAATGCTGCCATCACAATGGAGTCTGATGAAGGTGATGACCATGACGACAAATGGCAAATACAAGCTGCATCCGATCACACATTCCATCTTAAACATAAAGCAGGTAATTCTTGGAAAACAGCTTGGTATACTTGGACTGATAGCAATATAGGTTACCCTGTATTTAGAGCGTCGAAAGGTGGTATAAGATTTGATGATGGGTTAGATAATGTCAACTCAGATCAATGGAACGCCTATGGTGGAGACGGACATGCCCATAGAACAGCTGGTCAAGCATATATAACAGCTGATGACCACATGAGGTTTAGAAAGAACGGTAACGCAGAGAATAAGAGGTTTGATTTAAGAACTGATACTGGTAACGGACAAGCTCAGAATGATTGGCAAGATGACCAGTTTGACTTTGCTGAATTCTTTGAATGGTCTGATGGTAATCCTAATGGAGAAGATCGTATAGGACATACCGTAGCTGTAGATGGCTTAACAGGTAAGATAAAGATAGCTGCAGAAGGTGATGCTGTTATAGGTGTTGTCTCTGGTACTGCTGCCTTTACTGCTAACTGTGCAGCTATGGGATGGCATGGTAAATATATCCGTGATGAATGGGGTAGATACCGCTTTGATCTAGTTAAAGATGAAGATGGTAATCAACTTTATAGTGATCTAAATAAGAAACATGAAAAAATAACTTTAGTTGAAAACCCTGACTGGGATCAAACTAAAGAATATTATTCTAGAGACGAAAGGAAAGAGTGGGATAAGATTGGTATTATTGGACAGTGTTATGTCCGAAAAGCAGCGGTTATTCCTTCTAGCTGGATAAAATTGAAGGAAATTGATTCAACAAAAGACTTTTATCTTATTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7793ae255dfbb329856d9b8a6161f73dda4e7fab6ce27b7b91fac44dcda5508b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6673
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSP10 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank