Protein

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Genbank accession
YP_007676557.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MGLKSTFSTNEGKAEACAVDKYVNTAYDNMVIISDNIEALLEISDNLEYLTVYLGSYTTDPTERPDGTPLQDGDYYFNTLINALVYYDLAETNWFTVDPQELLDARDAAQAAQAAAETAEANALVSENNAAASELNASNSEAAALASEQAAAISEANASASETAAALSETNAAASEANALASENAAKASETAAALSETNAATSETNAANSASAALTSETNAAASETSAANSAVVAGGYAADAEAAFDNFNDLYLGAKTADPTLDNDGNPLQVGATYWNSVTNDLRYWNGVSWDIPEETAIQAANTAVAARDDAQISETNAAASAAAASTSETNAATSETNAATSEANALASEQAAALSETNAATSASNAATSEFNAAQSASDAAGSAASAAQSEANIDVAVTEAQNDIIGGSIFKGSNGEHVQNGDTVPSGTTHLRVEIGGEPTIVAMYPKSSGDVSSLSDDGATIGGTQVTFFKEIEKSVVYASNWIGLTTTNVTEKLIEMHKYAYENRLQVIYDGNFSLEVDLSKTSTSQGGTPIFVDSDTDFGGVTFSFKNASSVGGGDDDEFMRFDAQDLIDISGFVNISEFGYGSTYAPSLAAYEDAYIFINTTKDLVKRNPSDTEFRTYAVNNKVHRFGQLQYPVNYDCSDATGFKSAVLRPSKNAITIKGGIIDCTGVNNARLFVTARNNTTLDGIKCVRSDSPLNTSNNIFYFDRCCDITYKNMKPLGQNSSGTGTYGISGDGAVNLTLDNVSAVVGWGAMGTNYVNGLNVIGGYLSRVDVHFMGENIEVTRTQLKGLNIQVGIGGGYLKVKDVSVVLGKDPQRNIVDANRLIYIRPDYGSTWKGDIDIDGVSIRVAKEYDVVDTAFDMVQNVFSDNDTLVSPEIHYPFGMSLSAKNVSILVYPVGGFMGLELFNCGTVGPQQSRMMLPLKIEMESFKSITRNSEVPIVLSRTFSFIFDNDPQLHWAHTQSKSNYSGSDVEIFISDIDAIGTRPNGYISRDQQRNLLCFLSRSIDYDAHPNLPRFSVKGEKLSNLGFTWENQGDVDIDNSHIIGVWNNSNTTAIIKVTGSRCEVMKNPNGDNAYRRSFGICFENCIFIPSVGSLNDTLRTDNIVSASKCLVHKDVNLLTGAGMRTRQEMFDGFVDDPNGLVSLT
Physico‐chemical
properties
protein length:1152 AA
molecular weight: 122655,30290 Da
isoelectric point:4,35889
aromaticity:0,08160
hydropathy:-0,22387

Domains

Domains [InterPro]
DC_1362
ATT
4–182
DC_1362 DC_0194
Coil
Unmapped
102–122
Coil DC_0401
YP_007676557.1
1 1152
Architecture
ATT
STR
ATT 4-182 | STR 183-1144 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007676557.1
1 1152
Domain Start End Length (AA) Confidence
N-terminal 1 495 495 0,9971
Central domain 496 1140 646 0,9721
C-terminal 1141 1152 11 0,6780
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-495
Central
496-1140
C-terminal
1141-1152

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VBP32
[NCBI] 		754072 Uroviricota > Caudoviricetes > Schitoviridae > Stoningtonvirus > Stoningtonvirus VBP47
Host Vibrio parahaemolyticus RIMD 2210633
[NCBI] 		223926 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676557.1 [NCBI]
Genbank nucleotide accession
NC_020868 [NCBI]
CDS location
range 26733 -> 30191
strand +
CDS
ATGGGTTTAAAATCAACCTTTAGTACAAATGAAGGTAAGGCAGAAGCATGTGCGGTGGACAAATATGTCAACACTGCATATGACAACATGGTTATCATCTCTGACAATATTGAAGCACTGTTAGAGATCTCAGATAATCTTGAGTACCTTACTGTTTATTTAGGTTCGTACACTACGGACCCTACAGAGCGTCCTGATGGAACTCCATTACAGGATGGTGACTACTACTTTAACACACTGATCAATGCATTGGTGTACTACGACCTTGCTGAAACAAACTGGTTTACAGTAGATCCTCAGGAACTTCTCGATGCTCGTGATGCAGCTCAGGCTGCTCAGGCAGCGGCAGAGACGGCTGAAGCTAATGCTTTAGTATCTGAGAACAATGCTGCGGCATCTGAACTTAATGCTTCCAATAGTGAGGCAGCTGCACTTGCATCTGAACAAGCTGCTGCGATCTCTGAAGCTAACGCTTCAGCTAGTGAGACTGCTGCTGCACTAAGTGAAACGAATGCTGCTGCAAGTGAAGCAAATGCACTAGCCTCTGAGAACGCCGCTAAGGCCTCTGAGACAGCTGCAGCTCTGAGTGAGACCAATGCTGCCACTTCAGAGACAAACGCTGCTAACAGCGCTTCTGCGGCCCTCACAAGCGAGACTAATGCTGCTGCGTCAGAAACGTCTGCTGCTAACTCTGCTGTAGTTGCTGGAGGTTATGCTGCGGATGCCGAAGCTGCTTTTGATAACTTCAATGATTTGTACTTAGGTGCGAAGACGGCTGACCCTACTCTAGATAACGACGGTAACCCGTTACAGGTAGGTGCTACTTACTGGAACTCTGTCACTAACGATCTTCGTTACTGGAACGGCGTTTCATGGGATATCCCAGAAGAGACAGCAATCCAAGCGGCTAATACTGCGGTAGCAGCTCGTGATGATGCACAGATCTCAGAGACTAATGCGGCGGCTAGTGCTGCGGCTGCAAGTACTTCTGAAACTAACGCTGCTACTTCTGAAACTAACGCTGCTACTTCTGAGGCTAATGCTCTTGCTAGTGAACAGGCGGCAGCTCTTTCGGAGACGAACGCGGCTACTTCTGCATCTAATGCAGCAACCTCAGAATTCAACGCAGCTCAAAGCGCATCCGATGCAGCAGGCTCAGCAGCAAGTGCAGCGCAGTCAGAAGCAAATATTGATGTAGCTGTAACTGAAGCACAAAACGACATTATAGGCGGTTCGATATTTAAAGGGTCGAATGGTGAGCATGTACAGAACGGCGACACTGTCCCGTCGGGCACCACTCATCTTCGTGTTGAGATTGGTGGCGAGCCTACGATTGTGGCGATGTATCCTAAGTCCAGTGGCGATGTATCTTCATTATCAGATGATGGAGCCACTATTGGTGGTACTCAAGTTACATTCTTCAAGGAGATAGAGAAAAGCGTTGTTTACGCATCTAATTGGATTGGCTTGACGACAACAAACGTTACAGAAAAACTAATCGAGATGCATAAGTATGCCTACGAGAATAGATTGCAAGTAATATATGACGGGAATTTCTCACTGGAGGTTGACCTGTCAAAGACGTCTACATCTCAAGGTGGTACGCCTATTTTTGTGGACTCTGACACTGATTTTGGTGGTGTTACTTTTTCATTCAAAAATGCATCATCTGTTGGTGGTGGAGATGATGATGAGTTCATGCGGTTCGACGCCCAAGACCTGATTGATATTTCTGGATTTGTAAACATATCCGAGTTTGGTTATGGGTCTACGTATGCTCCATCATTGGCAGCGTATGAGGATGCGTATATCTTTATAAATACAACTAAAGACCTGGTAAAACGAAACCCTTCTGACACAGAATTTAGGACATACGCAGTTAACAACAAAGTCCATCGTTTCGGCCAGCTTCAATACCCCGTTAACTACGACTGCTCTGATGCTACTGGTTTCAAGTCCGCCGTACTTAGACCAAGCAAAAACGCCATAACAATCAAGGGAGGTATTATTGATTGTACTGGCGTTAACAACGCAAGGTTGTTCGTTACAGCAAGGAATAACACAACACTAGACGGAATTAAGTGCGTTAGGTCTGATTCTCCACTTAATACATCAAACAACATTTTTTACTTTGATAGATGTTGCGACATAACTTACAAGAACATGAAGCCACTAGGTCAAAATTCTAGTGGGACAGGCACTTATGGAATATCTGGTGATGGTGCGGTAAATCTAACTTTAGATAATGTTTCTGCTGTCGTCGGCTGGGGAGCCATGGGCACTAACTATGTTAACGGACTAAATGTCATTGGTGGTTATTTGAGTCGCGTGGATGTTCACTTTATGGGTGAAAATATAGAGGTAACACGAACTCAGCTTAAAGGCCTGAACATCCAAGTCGGAATTGGCGGTGGATACCTTAAAGTCAAGGATGTATCGGTTGTTCTTGGTAAAGACCCACAAAGAAATATAGTTGACGCTAACAGGCTTATATACATTCGCCCTGACTACGGAAGCACATGGAAAGGCGACATTGACATAGATGGTGTTAGTATACGTGTCGCCAAGGAATACGACGTTGTGGACACTGCTTTCGATATGGTTCAGAACGTATTCAGTGATAATGACACCCTCGTCAGTCCCGAAATTCATTACCCGTTTGGTATGTCGCTATCAGCTAAGAATGTGTCAATCCTCGTTTACCCTGTTGGTGGATTTATGGGTCTCGAATTATTTAACTGTGGAACGGTCGGGCCGCAGCAATCAAGAATGATGCTTCCACTAAAAATTGAGATGGAATCATTCAAATCAATAACCAGAAACTCAGAAGTTCCAATTGTCTTGAGTAGAACTTTTAGTTTTATATTCGACAATGACCCACAACTTCATTGGGCGCACACTCAATCAAAATCTAACTATAGCGGTTCTGATGTTGAGATTTTCATTTCTGATATAGACGCAATAGGAACAAGACCGAATGGATATATATCTAGAGACCAGCAAAGAAACCTTCTTTGTTTCTTGAGTAGAAGTATAGATTACGACGCACACCCGAACTTGCCTAGATTCTCCGTGAAAGGTGAAAAGCTCTCAAATCTAGGGTTTACATGGGAGAATCAAGGTGATGTTGACATAGACAATAGCCATATTATTGGAGTTTGGAACAACTCGAACACCACAGCCATAATCAAGGTTACTGGCAGTCGGTGCGAGGTCATGAAGAATCCAAACGGAGACAATGCGTACAGAAGGTCATTTGGTATATGCTTTGAGAATTGTATTTTCATCCCTTCTGTTGGGTCATTAAACGACACATTGCGTACTGACAATATTGTTTCTGCAAGTAAATGTCTGGTGCATAAAGATGTGAACCTGCTTACTGGCGCTGGAATGAGAACAAGACAGGAAATGTTCGATGGTTTTGTAGACGACCCAAATGGTTTGGTTTCACTAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
be1fadb2939a3e42b98df16c3310e9e7b079898e4cfcf5258483c9f744cc5784
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5780
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage VBP32 Henn,M.R., Wharam,S., Gilg,I., Martinez Martinez,J., Wilson,W., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank