Protein

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Genbank accession
YP_009017762.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,68
Protein sequence
MPLITQTIKNLKGGISQQPDILRFPDQGQAQINGFSSEVEGLQKRPPSVHIKKLDTKHNGKPFVKLINRDQFERYYASFHPGGSLTVIDLDGVQKTVNAPQGFGYINTANPRTDLRMVTVADFTFVINKAVAVTMNGVQSFPGYRTNGRALVNVKGGQYSRTYSIEFNGGVQASYTTPNGSDPSHAAQIDTQYIAQQLGNALVAALGPSGWGIDVGPNYIFIEAPSASSVFNLKIRDGFNNGLMAGCIFEVQRFNMLPAQARDGYIVKVLGDPGSGADDYYARFDLARGVWVECQAPGTVGQFTKATMPHALVREANGTFTFREVDWQERPSGDADTSPEPSFVGQKINDIFFFRNRLGILAGENVILSASGEFFKFWPKSVVTAADTDPIDVAVSHNRVSTLHHAVSFAEELLLWSDQTQFILKSDGILSTKTVKVDTATEFESAIDARPVAAGRGVYFAAPRASFTSVRRYYAVQDTSAVKNAEDISAHVPSYIPNGVFFLGSSTTENVVTVLTEGAESRLYLYKYLYLQEQLVQQAWSHWEFGPGSRVLACDLIGAIMYILVDAPSGTFLESVEFTQNTKDFDFEPFRLYMDRKKQVENMTYNVDANETYVYLDDEYEGAMPFSGDYWLVSEEGRANFFPEPAGGWVPVDGKLVLPGDWTAETLIIGEAYTFEYEFSKLLLKVQDETGVRSEDVGRLQIQRAWVNYNNSGPFDVVVCDKFTYTMSGKKLGSYVLGDDVLDTGQFRFPVMTASDRCRVKIVSDNPGPVNLIGAGWIGKYNRREQAL
Physico‐chemical
properties
protein length:788 AA
molecular weight: 87194,97950 Da
isoelectric point:5,15231
aromaticity:0,11802
hydropathy:-0,22513

Domains

Domains [InterPro]
IPR058003
TTP
1–787
IPR058003
YP_009017762.1
1 788
Architecture
TTP
TTP 1-787 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009017762.1
1 788
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9921
Central domain 143 347 206 0,0858
C-terminal 348 788 440 0,1614
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-347
C-terminal
348-788

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSB2
[NCBI] 		913183 Uroviricota > Caudoviricetes > Autographivirales > Kelmasvirus > Kelmasvirus RSB2
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009017762.1 [NCBI]
Genbank nucleotide accession
NC_023736 [NCBI]
CDS location
range 25227 -> 27593
strand +
CDS
ATGCCACTCATTACACAGACAATCAAGAACCTGAAGGGCGGCATCTCCCAGCAGCCCGACATCCTGCGCTTCCCCGACCAAGGGCAGGCCCAGATCAACGGGTTCTCCTCGGAGGTAGAGGGCTTGCAGAAGCGCCCGCCTTCTGTCCACATCAAGAAGCTCGACACCAAGCATAACGGGAAGCCGTTCGTGAAGCTGATCAACCGTGACCAGTTCGAGCGGTACTATGCGTCCTTCCACCCGGGAGGCTCCCTGACCGTGATCGACTTGGACGGCGTGCAGAAGACCGTCAACGCCCCGCAGGGCTTCGGCTACATCAACACCGCGAATCCCCGCACGGACCTCCGCATGGTCACCGTGGCGGACTTCACCTTCGTGATCAACAAGGCGGTCGCCGTGACAATGAACGGCGTGCAGTCCTTCCCGGGCTACCGCACCAACGGGCGCGCGCTGGTTAACGTTAAGGGCGGGCAGTACAGCCGCACCTACTCCATCGAGTTCAACGGTGGAGTCCAGGCCAGCTACACGACACCGAACGGTAGCGACCCCAGCCACGCAGCGCAGATCGACACCCAGTACATCGCCCAGCAGTTGGGCAACGCGCTTGTGGCCGCGCTGGGTCCCTCGGGGTGGGGCATTGATGTGGGGCCTAACTACATCTTCATTGAGGCCCCCTCCGCATCCTCGGTGTTCAACCTGAAGATTCGGGACGGCTTCAACAATGGCCTGATGGCCGGGTGCATCTTCGAGGTGCAACGGTTCAACATGCTGCCCGCTCAGGCCCGGGACGGCTACATCGTGAAGGTCCTCGGGGACCCCGGAAGTGGCGCCGACGACTACTACGCACGGTTCGATCTGGCCCGTGGTGTCTGGGTCGAGTGCCAAGCGCCGGGGACCGTGGGGCAGTTCACCAAGGCCACCATGCCGCACGCCCTTGTACGGGAAGCCAACGGGACCTTTACGTTCCGTGAGGTGGACTGGCAGGAGCGCCCCAGCGGCGATGCGGACACCAGCCCGGAACCCAGCTTCGTGGGCCAGAAGATCAACGACATCTTCTTCTTCCGTAACCGCTTGGGTATCCTCGCGGGCGAGAACGTGATCCTGTCGGCCTCGGGCGAGTTCTTCAAGTTCTGGCCCAAGTCGGTCGTGACTGCGGCGGACACCGACCCCATCGACGTGGCGGTCTCGCACAACCGCGTTAGCACCCTGCACCACGCCGTGTCGTTCGCGGAGGAGTTGCTGCTGTGGAGCGACCAGACCCAGTTCATCCTGAAGTCGGACGGCATCCTGTCCACGAAGACGGTCAAGGTAGACACGGCCACGGAGTTCGAGTCGGCCATCGACGCGCGCCCGGTAGCGGCGGGCCGTGGTGTGTACTTCGCAGCGCCCCGCGCCAGCTTCACCTCAGTGCGCCGGTACTACGCTGTGCAGGACACCTCAGCCGTTAAGAACGCCGAGGACATCTCCGCGCACGTCCCCAGCTACATCCCCAACGGGGTGTTCTTCCTCGGGTCGTCCACCACCGAGAACGTGGTCACTGTCCTGACAGAGGGCGCAGAGTCCCGGCTGTACCTCTACAAGTATCTCTACCTGCAAGAGCAGCTTGTGCAGCAGGCGTGGAGCCACTGGGAGTTCGGGCCGGGTTCTCGGGTCCTCGCGTGTGACCTCATTGGGGCCATCATGTACATCCTCGTGGATGCCCCCAGCGGGACCTTCCTTGAGTCCGTAGAGTTCACCCAGAACACGAAAGACTTCGACTTCGAACCGTTCCGGCTCTACATGGACCGTAAGAAGCAAGTGGAGAACATGACCTACAACGTGGACGCCAACGAGACCTACGTGTATCTGGACGACGAGTATGAGGGTGCAATGCCCTTCTCGGGCGACTACTGGCTGGTCAGCGAGGAAGGCCGCGCGAACTTCTTCCCGGAGCCTGCGGGCGGCTGGGTGCCGGTTGATGGGAAGCTGGTCCTCCCGGGCGACTGGACGGCTGAAACGCTGATCATCGGGGAAGCCTACACGTTCGAATACGAGTTCTCAAAGTTGCTCCTCAAGGTGCAGGACGAGACCGGCGTTCGGAGCGAGGACGTGGGCCGCCTCCAGATTCAACGGGCTTGGGTCAACTACAACAACTCCGGGCCGTTCGACGTAGTGGTGTGCGACAAGTTCACCTACACGATGTCCGGCAAGAAGCTGGGGTCCTACGTGCTGGGCGATGACGTGCTGGATACTGGGCAGTTCCGCTTCCCGGTGATGACCGCATCGGATCGCTGCCGCGTGAAGATCGTGTCGGATAACCCCGGCCCGGTGAACCTGATCGGCGCAGGCTGGATCGGCAAGTACAACCGCAGGGAACAAGCTCTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e072181c78f344f5a9048891e656607ebf7dda4ba88a85ddc180946a3e663fdd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8899
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Ralstonia solanacearum phages RSB2 and RSB3 Kawasaki,T., Ishikawa,H., Shimizu,M., Omoto,W., Fujie,M. and Yamada,T. 2020 — GenBank