Protein

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Genbank accession
YP_011108742.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLNNLNQPKGSTIGVLKDGRTIQQAIDGLENPVHYIKDVSITPSELLAVAVEAARLGRTVEFGPGHYTNQGHPFEVDFPLNLDVPVGTFLDFPIIIRGKTVKMVRSVATNLTATQCPAGTTVIAGDFSAFPVGSVVGVKLGDNTNGSASYNNEAGWDFTTVAAASNTSITLSTGLRWAFDKPEVFTPEYAVRYSGQLSRSSYFIPGDYTSGLNVGDIIRVENIDGTDGVHGNKEYFEMLKVSSIDSSGITVETRLRYTHVNPWIVKTGLVKGSSVTGGGRLKRLEVRGVDTPKVNSVDVDRLIVGLCYNIDVGEITSRGVGEPSSVNFTFCFGRGFLYNVRASGSVSTTDNSALKLMSCPGLIINNCSPHNSASTGSQGDYGFYVDAYYSPYWCWNDGMSINGIVTETPRSAVTRALWLFGLRGCSVSNLSGAQVFLQGCAKSVFSNIVTPDNLLELRDLSGCIVSGMANNALVLGCWNSTFDLTLFGIGSGSNLNIALRAGAGVTHPETGAPTTLGKNNTFNVKSFSPSSLAVTLSIAKQERPIFGAGCVDVDSANKSVTLGSDVTVPTMLPLALTKGIDSGSGWVGGRTKGGIWFDGNYRDAVVRWNGQYVWVADNGSLKAAPTKPDSDSPSNGVVIGP
Physico‐chemical
properties
protein length:641 AA
molecular weight: 67956,74760 Da
isoelectric point:6,03627
aromaticity:0,08580
hydropathy:-0,01919

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011108742.1
1 641
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,7956
Central domain 58 585 529 0,9735
C-terminal 586 641 55 0,9158
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-585
C-terminal
586-641

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage Oda
[NCBI] 		3018522 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Przondovirus
Host Klebsiella michiganensis
[NCBI] 		1134687 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011108742.1 [NCBI]
Genbank nucleotide accession
NC_092455 [NCBI]
CDS location
range 36187 -> 38112
strand +
CDS
ATGTTAAACAACCTGAACCAGCCGAAAGGCTCGACCATTGGTGTGCTCAAGGATGGGCGCACTATCCAACAGGCAATTGATGGCTTGGAGAACCCGGTGCATTACATCAAAGATGTGAGCATCACGCCATCGGAACTACTGGCAGTAGCGGTAGAGGCTGCACGACTTGGCCGGACTGTGGAGTTTGGGCCGGGGCACTACACGAACCAAGGTCATCCATTCGAGGTGGACTTCCCGCTTAATCTGGATGTTCCAGTAGGAACCTTTCTGGACTTCCCTATCATCATACGAGGTAAGACCGTTAAGATGGTAAGGAGCGTGGCTACGAACCTGACTGCCACACAGTGCCCTGCTGGTACAACAGTCATTGCCGGGGACTTCTCAGCGTTCCCTGTTGGTTCCGTAGTGGGTGTAAAACTCGGGGATAATACCAACGGCTCAGCAAGTTATAACAACGAGGCTGGCTGGGATTTCACTACAGTTGCGGCGGCGTCCAACACCTCAATCACCCTCAGCACAGGGCTACGGTGGGCTTTCGATAAACCGGAAGTGTTTACCCCGGAGTATGCGGTACGATACTCAGGACAGCTGAGTCGGTCATCTTACTTCATACCGGGAGATTACACTTCCGGGCTGAATGTCGGAGATATCATCCGTGTTGAGAACATTGACGGTACTGATGGGGTCCACGGCAACAAGGAATACTTCGAGATGCTTAAGGTATCAAGTATAGATTCCTCAGGTATAACAGTTGAGACGCGCCTTCGGTATACCCATGTGAACCCTTGGATTGTAAAGACAGGGCTGGTCAAAGGCTCTTCGGTAACAGGGGGAGGTCGATTGAAGCGTTTAGAAGTACGCGGTGTTGACACGCCCAAGGTTAACAGTGTAGATGTGGACCGCTTAATTGTCGGTCTGTGCTACAACATCGACGTTGGGGAGATAACCTCTCGTGGCGTCGGTGAGCCTTCCTCGGTGAACTTCACGTTCTGCTTCGGTCGGGGCTTCCTGTACAACGTAAGGGCCTCGGGGTCGGTGTCCACAACGGATAACTCAGCGTTAAAGTTGATGAGCTGTCCGGGCCTAATCATTAACAACTGTTCACCTCACAACTCTGCATCCACTGGTTCTCAAGGTGACTATGGGTTCTACGTTGACGCCTATTACTCTCCGTACTGGTGCTGGAACGACGGCATGTCTATCAATGGGATTGTCACTGAGACACCTAGGTCGGCTGTAACACGTGCGCTGTGGCTGTTTGGTCTGAGAGGCTGTTCTGTTAGTAACCTGTCCGGTGCCCAAGTGTTCCTACAGGGCTGCGCTAAGTCGGTGTTCTCTAACATCGTCACCCCGGACAATCTCCTTGAACTACGGGACCTGTCTGGCTGCATTGTATCCGGCATGGCAAATAACGCGCTGGTACTCGGCTGTTGGAACTCGACGTTCGACCTTACGCTATTTGGTATTGGCTCTGGGTCAAACCTTAACATAGCGTTACGGGCCGGGGCAGGCGTTACCCACCCGGAGACTGGTGCGCCCACTACCCTCGGTAAGAACAACACGTTCAACGTTAAGAGTTTTAGCCCATCGTCGCTTGCTGTCACCCTAAGTATCGCCAAACAAGAGCGCCCAATCTTTGGTGCTGGCTGTGTTGACGTTGATTCTGCAAACAAGTCAGTCACTCTCGGTAGTGACGTTACCGTTCCGACCATGCTCCCGCTGGCGTTAACCAAAGGTATCGACTCCGGCTCTGGCTGGGTTGGTGGCAGGACTAAGGGTGGTATCTGGTTCGATGGTAACTACCGCGATGCGGTGGTACGCTGGAACGGTCAGTATGTATGGGTGGCTGATAATGGTTCGCTCAAAGCAGCACCTACTAAACCGGATTCTGACTCGCCTTCTAATGGTGTGGTTATTGGTCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
34bc9b658e5f0c0f9c147272e7293f8513cc56480e0e0afd14e56c42a6b5475a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7618
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses Elek,C.K.A. and Adriaenssens,E.M. — — GenBank