Protein

View in Explore
Genbank accession
YP_010083036.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKLDNLITKLHSYFSQKFVSQLENNFEQIKYWTNKSDDTFNEHLTTQKNAHTTDQIKHKTTKGKDVVLSNHENYQDELIEHLVLGHNGDGNNELKASHTSMDAQSFDSLHQRLYHDFLRESNAREELRADLTKKIQRIVNVDDFGGDPTGQKDSTKAFQDALGNGNVQVTMSGGTYLTTGIKMPNNSRLVGQGKDITTIKFMDETPAENIGITNLKMSGGAENISLESFSFNGNKFRQNKTLKATGGSRSSNIRFAGVTNGYIYNVKSYDALLHCIDVTYANDNYYYEGDGNRVPYALESKHIHIDNCEVYGCGDDGITTHHSRYITISNCYAHTPTGGSNNNGVEIDDGSQYVFLSNNRTKGNFGGLEIKAHSNASAASGVFVNGHVSIEDTRAYNIRHIGHHRAKTDNKSLTAYDVVLNNCLALNPKYNGVYPGSTPRALLISAYKNVSVNNFTAIGDDDFGKLEGGKLDKKQPAIAIQFMSENISLNNINVRNFKNAEVDIRLFGGDNRPSRVILNNINIWNSSNNIGIGVGSKIYDTKITNCNLHGNGSGIGLRLTNNHAMISGITANNYSTPAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKSGHTQLILNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSTYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIRKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96913,10110 Da
isoelectric point:6,62796
aromaticity:0,07995
hydropathy:-0,55191

Domains

Domains [InterPro]
DC_0125
ATT
1–265
DC_0125 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR012334
STR
122–589
IPR012334 IPR021865
IPR011050
STR
133–527
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
138–367
IPR024535 DC_0616
IPR006626
Unmapped
258–280
IPR006626
YP_010083036.1
1 888
Architecture
ATT
STR
RBD
ATT 1-265 | STR 266-659 | RBD 660-884 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010083036.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9926
Central domain 154 615 463 0,9830
C-terminal 616 888 272 0,8361
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-615
C-terminal
616-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage IME1348_01
[NCBI] 		1965489 Uroviricota > Caudoviricetes > Rockefellervirus >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010083036.1 [NCBI]
Genbank nucleotide accession
NC_055036 [NCBI]
CDS location
range 30997 -> 33663
strand +
CDS
TTGAAATTAGATAACTTAATTACGAAACTTCACTCGTACTTTAGTCAAAAGTTTGTAAGTCAACTAGAAAATAACTTTGAACAAATTAAATACTGGACTAATAAAAGTGATGATACTTTTAACGAGCATTTAACCACTCAAAAAAATGCGCATACAACTGATCAAATCAAACACAAAACTACAAAAGGTAAAGATGTCGTATTATCTAATCATGAAAATTATCAAGATGAACTTATTGAACATCTTGTGTTAGGTCATAACGGTGATGGCAATAACGAATTAAAAGCTAGTCACACATCAATGGACGCTCAAAGTTTCGATTCTTTACACCAACGTCTATATCACGACTTTTTAAGAGAAAGTAACGCTAGAGAAGAACTAAGAGCCGACTTAACTAAGAAAATACAACGTATTGTTAACGTTGATGACTTTGGCGGAGATCCTACAGGTCAAAAGGACAGTACGAAAGCTTTCCAAGACGCATTAGGTAACGGCAATGTACAGGTAACTATGAGTGGTGGTACTTACCTTACAACAGGTATTAAAATGCCTAACAACTCTCGTTTGGTAGGACAAGGTAAAGACATTACTACAATTAAGTTTATGGACGAAACACCTGCAGAAAATATTGGTATCACTAACTTAAAAATGAGTGGTGGAGCTGAAAACATTTCATTAGAAAGTTTTTCGTTCAACGGGAATAAGTTTAGACAAAATAAAACACTTAAAGCTACCGGTGGTTCTCGTTCATCTAACATTAGATTTGCGGGTGTAACTAATGGATATATCTATAACGTTAAATCATATGACGCTTTACTACACTGTATCGATGTAACATATGCAAATGACAATTATTACTACGAAGGCGATGGAAACAGAGTGCCTTACGCATTAGAAAGTAAGCATATTCATATTGATAATTGTGAGGTATATGGTTGCGGAGATGATGGTATCACTACCCATCACTCTCGTTACATTACAATTTCTAATTGTTATGCACATACACCAACAGGTGGAAGTAATAACAACGGTGTAGAAATTGACGATGGCTCACAATATGTGTTCTTATCAAACAACAGAACCAAAGGTAACTTCGGTGGTTTAGAAATCAAAGCACACAGTAATGCAAGTGCTGCAAGTGGTGTGTTCGTTAACGGTCACGTATCAATCGAAGATACAAGAGCTTACAACATTCGACACATCGGTCATCATAGAGCTAAAACGGACAATAAAAGTTTGACTGCTTATGACGTGGTGCTAAATAATTGCTTAGCTTTAAACCCTAAATACAATGGTGTGTATCCAGGCTCAACACCTAGAGCATTATTAATCAGTGCTTATAAAAATGTATCAGTCAATAATTTCACTGCAATTGGTGATGATGATTTCGGAAAATTAGAAGGTGGAAAACTAGATAAAAAACAACCAGCAATAGCCATCCAATTCATGTCCGAAAACATCTCGCTTAATAATATTAATGTGCGTAACTTTAAAAATGCAGAAGTAGATATTAGATTATTTGGCGGAGATAATAGACCTTCAAGAGTTATTTTAAACAATATCAATATTTGGAATTCATCTAACAATATCGGTATCGGTGTTGGAAGTAAAATATACGATACTAAAATAACTAATTGTAACTTACACGGTAATGGTTCGGGCATAGGATTACGTTTGACAAATAACCACGCTATGATTAGTGGTATCACAGCAAACAATTATTCAACACCTGCATGGATAGCCGGCGAAAAATACGACACACCTCCTACAGTTGGAAAAGGTGGTGCTAGTATAGCGTCTACAGGAAGTGCAGGCGTAGCTAATGCTAGTGCAGTTATTGCGTCAACAGGTGGTTCGAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGATCACGTAGTGGTATTATCAACTCGTTAAATTCAGAAACAGACAAGTCAGGACACACACAATTAATTCTTAATAGTAATCGTGTTAAGTCACCTGGTAACTATCATGTTGTCGCTGGATATGGTTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCACTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAGATAAGAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGAACTGCTGCATTGGTAGCAAATGAAAAAACATTCCACCATAAAGATAGATTTTTAAAAAATGAGTATGGAGTAACGATTACAAACAGAAAACAAGTTGAATTTGTAGACGATGAAGGAAATGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAACGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACGAACATTGAAAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGTCGTGTCATGAAAATAACTTCTGAATACACTGAAGAACGTGGATGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
976fe9e4871e4d072038fd1af87948766994e140a82e34a44b1333de7601a59a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Analysis of active prophages from bacterial high-throughput sequencing data Sun,Q., Zhang,X., Xing,S. and Tong,Y.-G. 2018-12-28 — GenBank