Protein

View in Explore
Genbank accession
QBQ72841.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTRARDLANSADKDIAGTLTLDDLSVEGNITVTGTVDSRDINTDGTKLDGIEAGADVTDTANVSAAGAAMETGAAFTGNITFGDNDKAIFGAGSDLSIYHDGTNNRLTFNSANTYIQTDGIIHFTNIGNTEKHLTINDDGAVDLYHNNNLKLATTSTGIDVTGTAVTDGLTVAGNVSVDGGTIKLDGNYPVGTGNVALGDTALDSVSTGARNTAIGSSALTANNTNDNTALGFSALSASISDANVAIGTYALQANTTGNSNVSVGRSALLSDTTGSNNTGLGRDALRNNTTSNNNTAVGYQAGYSNTTGPNLTALGRWALYNNTTGADNTAVGLNALLNNSTGSSNIAVGQQALNSNTTASYNTAVGYQAGYSNTTGTQITALGVQSLKLNTTGNYNSAVGVNSLLSNTTGSNNTAIGDSSLINNTTGGANTAFGKDALLSNTTANNNTAVGYRAGYNTTTGESNVFIGGRSWDSGYGAGNNNTTGNYNIAIGSSTLGNNTTASNNTAVGHQAAYYNTTGTYNAFFGLEAGKANTTGSYNTVVGYKAGITATTANFNTYLGTFAGELGSGGKNTFVGNNAGVYVSSGNRNTIIGRYDGNQGGVDIRTSSNNIVLSDGDGNPRLYYSSLYKTWIAPYNGDTDGGRGGAPKISLSSGNTNYDCSIGMTDAVSKNVWWGLVGGNAYVMNVNNGVQLSSGATSWASVSDARLKTVTGTYTNAVDDLSQIEAVKFTWNADEDNTPQVGVIAQSVQSVVPEAMSVSEEDGVEYLSVRYTELIPLMIASIQEQQSTITALEARITALENA
Physico‐chemical
properties
protein length:803 AA
molecular weight: 82196,67750 Da
isoelectric point:4,38492
aromaticity:0,06725
hydropathy:-0,27696

Domains

Domains [InterPro]
DC_1933
STR
88–249
DC_1933 DC_2098 DC_1988 DC_1985
DC_1988
STR
239–335
DC_1988 IPR011049 IPR030392 Coil
IPR030392
CHP
704–797
IPR030392
QBQ72841.1
1 803
Architecture
STR
RBD
STR 88-568 | RBD 629-803
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ72841.1
1 803
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,1518
Central domain 159 595 438 0,9477
C-terminal 596 803 207 0,9315
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-595
C-terminal
596-803

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-7
[NCBI] 		2559286 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacteraceae bacterium
[NCBI] 		1904441 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ72841.1 [NCBI]
Genbank nucleotide accession
MK613349.1 [NCBI]
CDS location
range 38536 -> 40947
strand -
CDS
ATGACTAGAGCAAGAGACTTAGCTAACAGTGCTGACAAGGATATTGCGGGTACCCTTACACTTGATGACTTATCTGTTGAGGGTAATATTACCGTAACAGGTACTGTTGATAGCAGAGATATTAATACTGATGGCACTAAGCTAGATGGCATTGAGGCTGGTGCAGACGTAACTGATACAGCTAATGTAAGTGCTGCTGGCGCTGCAATGGAAACAGGTGCAGCTTTTACTGGCAACATAACCTTCGGTGACAACGACAAAGCCATCTTCGGCGCTGGGTCTGACCTCAGCATATATCATGATGGTACTAATAATAGACTTACTTTCAATTCAGCCAACACTTACATACAAACAGATGGTATTATCCATTTCACAAACATAGGTAATACTGAAAAACACCTTACGATTAACGATGACGGGGCTGTAGACCTTTACCACAACAACAATTTAAAACTCGCCACCACCTCCACAGGTATTGACGTAACTGGCACAGCCGTAACGGACGGTTTAACCGTAGCTGGCAACGTGTCAGTCGATGGCGGCACAATCAAGCTGGACGGGAATTATCCTGTTGGTACAGGCAACGTGGCGTTGGGTGATACTGCGTTGGATAGTGTAAGCACGGGGGCAAGAAATACCGCTATAGGGTCTTCTGCTCTTACTGCAAACAACACGAACGACAACACGGCTTTGGGCTTTAGTGCCTTGTCTGCTTCTATTTCTGACGCAAATGTTGCAATAGGAACTTATGCTCTACAAGCAAATACTACAGGCAATAGCAATGTTTCTGTTGGTCGTTCCGCTTTATTAAGTGACACCACGGGAAGCAACAATACAGGTCTGGGACGTGATGCCCTACGCAACAACACCACCTCAAACAACAACACAGCCGTTGGCTATCAGGCTGGTTACAGTAATACGACAGGGCCAAATTTAACAGCATTGGGCAGGTGGGCGCTATATAACAACACGACTGGCGCAGATAATACAGCAGTTGGCCTTAATGCTTTGCTTAACAACTCAACAGGTAGTTCTAACATTGCAGTTGGGCAGCAAGCACTTAACTCCAACACCACCGCATCCTATAACACTGCCGTTGGGTATCAAGCTGGGTATAGTAATACTACTGGCACTCAAATAACTGCTTTAGGTGTTCAATCTTTAAAACTTAATACAACAGGTAACTATAATAGCGCAGTTGGCGTTAATAGTTTGTTGTCAAACACCACAGGGTCTAACAATACCGCTATAGGTGATAGCTCACTTATAAACAACACGACAGGTGGAGCAAACACCGCATTTGGTAAAGATGCCCTCCTCTCCAACACCACCGCAAATAACAACACGGCAGTTGGATACCGTGCTGGCTACAACACCACAACAGGTGAAAGTAACGTATTCATTGGCGGCAGAAGCTGGGACAGTGGTTACGGTGCGGGTAACAACAACACGACAGGGAATTATAACATAGCCATCGGCTCAAGCACTTTGGGCAATAATACGACTGCAAGCAACAACACGGCTGTTGGGCATCAGGCTGCGTATTATAATACGACAGGAACGTACAACGCTTTCTTTGGCCTTGAGGCTGGGAAGGCTAATACCACAGGCAGTTACAACACTGTGGTAGGCTATAAAGCTGGCATTACAGCGACAACAGCTAATTTTAACACATACTTGGGGACATTTGCTGGTGAACTAGGTAGCGGTGGAAAAAACACATTTGTGGGTAACAACGCAGGTGTCTATGTATCTTCGGGCAACAGAAACACCATCATAGGCCGCTACGATGGCAACCAAGGCGGCGTAGACATCCGCACCTCAAGCAACAACATCGTGCTGTCGGATGGGGATGGTAATCCTAGGTTGTATTACTCTTCTTTATACAAAACTTGGATAGCTCCATATAACGGAGATACTGATGGTGGTAGAGGCGGTGCGCCAAAAATAAGCCTGAGTTCTGGCAACACCAATTACGACTGTAGCATTGGTATGACTGACGCTGTTTCTAAAAACGTGTGGTGGGGTTTAGTTGGCGGAAACGCATATGTAATGAACGTCAACAATGGTGTTCAGCTTAGTTCGGGTGCAACTTCTTGGGCTTCTGTTTCTGACGCTAGACTAAAAACGGTCACTGGCACATACACAAATGCTGTAGACGATCTGTCCCAAATTGAGGCTGTTAAGTTTACTTGGAACGCAGATGAAGACAACACACCTCAAGTTGGTGTAATAGCGCAATCGGTGCAGTCAGTTGTTCCCGAAGCTATGAGTGTTTCAGAAGAGGATGGAGTTGAATACCTTTCTGTTCGATACACTGAACTGATCCCACTTATGATTGCCTCTATCCAAGAGCAGCAATCAACTATTACTGCATTAGAGGCACGGATCACTGCCCTAGAAAACGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2bb909a42d44448865cc553634caa639a87cf12c15a9406b1f31a3dd9efdae15
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3165
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse, abundant and novel viruses infecting the marine abundant Roseobacter RCA lineage Zhang,Z.F., Chen,F., Chu,X., Zhang,H., Luo,H.W., Zhai,Z.Q., Yang,M.Y. and Zhao,Y.L. 2019 — GenBank