Protein

View in Explore
Genbank accession
YP_009856533.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MKKILDSARSYLKTNSRIKTASLISLELPGSTGTSTAFIYLTDYFRDVLYNGILYQAGKVKSISTHKQNRDLSIGSLSFTITGTAQDEVLKLVQNGVSFLDRLVSIHQAIITEDGSILPVDPDTNGPLLYFRGRITGGGIKDNISTSGVGTSTITWNCSNQFYDFDRVNGRFTDDASHRGLEVVAGQLVPSNGAKRLEYQEDYGFFHANKSISILAKYQVQEERYKLKSKKKLFGLSRSYSLKKYYETVTKEVDIDFNLAAKYIPVVYGVQKIPGIPIFADTELHNPNIVYVVYAFAEGEIDGFLDFSFGDNPMICMDSNDSSARTCFGVKKVAGDTMQRIASGISSSSPSVHGQEYKYNDGNGDIRIWTYHGKADQTASEVLVNIAKERGFYLQNMNGNGPEYWDARYKLLDTAYAVVRFTINENRTEIPEVSAEIQGKKIKIYHSDGRVTANSTSLNGIWQTLDYLTSDRYGANITIDQFPLQQLVQEAAILDIIDESYQVSWQPYWRYVGWTDPLAENRQIVQMNTILDTSESVFKNVQGLLESYGGAINNLSGQYRITVEKYSNTPLEINFLDTYGDLELSDTTGRNKFNSVQASIVDPALSWKTNAITFYNSKYKEQDKNLDKKLQLSFANITNYYTARSFADRELKKSRYSRTLSFSLPYQFIGIEPNDAIAFTYDRYGWDKKYFLVDEVENSREGKINVTLQEYGEDVFINSDQVDNSGNDIPDISNNVLPPRDFKYTPTPGGLVGSIGKNGELSWLPSLTNNVVYYSIVHSGHAEPYIVQQLETNPNERMIQEIIGEPAGLAIFEIRAVDINGRRSSPVTLSIELNSAKNLSVVSNFRVTNTASGDVTEFVGPDVKLAWDRIPEEDIIESIFYTLEIYDSQNRMLRSVRIENQYTYDYLLMYNKADFALHNSDALGINRKLYFRIRAEGDDGEQSVEWASI
Physico‐chemical
properties
protein length:949 AA
molecular weight: 107028,38760 Da
isoelectric point:5,16186
aromaticity:0,11275
hydropathy:-0,39958

Domains

Domains [InterPro]
DC_0187
STR
228–947
DC_0187
IPR032876
ATT
598–696
IPR032876
YP_009856533.1
1 949
Architecture
STR
ATT
STR
STR 228-597 | ATT 598-696 | STR 697-947 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009856533.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,9301
Central domain 313 526 215 0,4137
C-terminal 527 949 422 0,0042
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-526
C-terminal
527-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage L6jm
[NCBI] 		2713222 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus L6jm
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009856533.1 [NCBI]
Genbank nucleotide accession
NC_048852 [NCBI]
CDS location
range 86626 -> 89475
strand -
CDS
ATGAAAAAAATATTAGATAGTGCTAGAAGCTACTTAAAAACTAACAGCAGAATAAAAACTGCTAGTCTAATTTCCCTAGAATTACCTGGCTCTACTGGTACTAGTACTGCTTTTATTTATTTAACTGATTATTTTAGAGATGTACTATATAATGGTATTTTGTACCAGGCCGGTAAAGTTAAGTCTATTAGCACACATAAACAAAATAGAGATTTATCTATTGGCAGTCTATCTTTTACTATTACAGGTACAGCGCAGGATGAAGTATTGAAACTAGTGCAGAATGGTGTGTCCTTTTTAGATAGACTAGTATCAATCCACCAAGCAATTATTACAGAGGACGGTTCTATTTTACCTGTAGACCCAGACACAAATGGCCCTTTATTATACTTTAGGGGGAGAATTACCGGTGGAGGTATTAAGGATAACATTAGTACTTCAGGGGTTGGAACCTCCACAATTACTTGGAATTGTTCTAACCAATTCTATGATTTTGATAGGGTTAATGGTAGATTTACTGATGATGCTTCTCATAGGGGGCTTGAGGTTGTAGCAGGGCAGTTAGTTCCATCTAACGGGGCTAAAAGACTTGAGTACCAAGAAGATTATGGGTTCTTTCACGCCAATAAAAGTATTTCTATTCTAGCAAAATATCAGGTACAGGAAGAAAGATACAAGCTAAAGTCTAAGAAAAAGCTATTTGGCCTATCTAGAAGCTATAGTCTTAAAAAGTATTATGAGACTGTTACTAAAGAAGTAGATATAGATTTTAACCTTGCTGCTAAATATATACCAGTAGTTTATGGTGTACAGAAAATACCTGGAATACCTATTTTTGCGGATACGGAATTACACAATCCTAATATAGTTTACGTAGTATATGCTTTTGCTGAAGGAGAGATAGACGGTTTTCTTGACTTTTCCTTCGGGGATAACCCTATGATTTGTATGGACTCTAATGATAGCTCTGCTAGAACCTGTTTCGGTGTTAAAAAAGTAGCCGGAGACACCATGCAAAGAATAGCATCAGGAATATCTTCTAGTAGTCCTTCTGTGCATGGTCAGGAATATAAGTATAATGATGGTAATGGTGATATAAGAATTTGGACTTATCATGGAAAAGCTGATCAAACGGCTTCTGAAGTATTAGTAAATATAGCGAAGGAACGTGGGTTCTACCTCCAAAATATGAACGGTAATGGGCCTGAGTACTGGGATGCTAGATATAAACTATTAGATACTGCATACGCGGTAGTACGCTTTACTATTAATGAAAATAGAACTGAGATCCCAGAAGTTAGTGCTGAGATTCAGGGTAAGAAGATAAAAATCTATCATTCTGATGGTAGAGTAACTGCTAATAGCACTAGTTTAAATGGTATCTGGCAAACACTTGATTACTTAACTTCAGATAGATACGGTGCTAACATTACTATTGATCAGTTCCCTCTTCAACAATTGGTACAGGAAGCTGCTATCCTAGATATTATAGATGAATCTTACCAAGTATCCTGGCAGCCATACTGGAGATACGTTGGGTGGACTGATCCATTAGCAGAAAATAGACAAATAGTACAAATGAATACTATTCTAGATACATCTGAATCAGTATTTAAAAATGTGCAAGGTTTGCTAGAGTCCTATGGCGGGGCTATTAACAACTTATCTGGCCAGTATAGGATTACTGTAGAAAAATACTCTAATACTCCATTAGAGATTAATTTTCTGGATACTTATGGTGACTTAGAGCTATCAGATACTACTGGTAGAAATAAATTCAACTCAGTTCAAGCATCTATCGTAGATCCTGCTCTTAGCTGGAAAACTAATGCTATTACCTTTTACAACTCTAAGTATAAAGAGCAGGATAAAAATCTAGACAAAAAATTACAGTTATCTTTTGCAAATATAACTAACTACTACACTGCTAGAAGTTTTGCAGACAGAGAACTTAAGAAATCCAGGTATTCTAGAACCCTCTCATTTTCTTTGCCATATCAATTCATTGGTATTGAGCCTAACGATGCTATTGCATTTACATATGACCGTTACGGATGGGATAAGAAATACTTTTTAGTAGATGAAGTCGAAAACTCTAGAGAAGGAAAGATAAACGTCACCCTACAGGAGTATGGGGAAGATGTATTTATCAACTCTGATCAAGTAGATAATAGTGGTAATGATATACCAGATATTAGTAACAACGTTCTTCCTCCTAGAGATTTTAAATATACTCCTACACCGGGTGGTTTAGTTGGCTCTATAGGAAAAAATGGTGAGCTATCTTGGCTTCCAAGTTTAACTAATAACGTAGTTTATTACTCTATCGTGCATTCAGGTCATGCTGAACCCTATATCGTGCAGCAACTAGAAACAAATCCCAATGAACGCATGATCCAAGAGATAATTGGAGAGCCTGCAGGTTTAGCAATATTTGAAATAAGAGCTGTGGATATAAACGGTAGAAGAAGTTCTCCAGTAACATTATCTATAGAACTTAACTCTGCTAAAAACCTAAGCGTAGTATCTAATTTTAGAGTAACTAATACGGCCTCTGGGGATGTAACTGAGTTTGTAGGCCCAGATGTAAAACTAGCTTGGGATAGGATACCTGAAGAAGATATAATAGAAAGTATATTCTATACTCTGGAAATCTATGATTCCCAGAATAGAATGCTAAGAAGTGTACGTATTGAAAATCAGTATACTTATGACTATTTATTAATGTATAATAAGGCAGATTTTGCTCTTCATAACAGTGATGCTCTAGGAATCAATAGAAAACTATATTTTCGTATTAGAGCAGAAGGAGATGATGGAGAACAGTCTGTGGAGTGGGCATCCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
582195d53df555f7925fb4f0af0ea59721af7cbc3fb25a67d75b228dbafd46a0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8161
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of polyvalent bacteriophage infecting Salmonella choleraesuis and Escherichia coli Zhang,Y., Lin,Y. and Zhu,W. 2021-07-14 — GenBank