Protein

View in Explore
Genbank accession
AFO71364.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAFEPDLVTAVIRSLNRKNLVPSARAANPNDVRLVSVVVRDERTLDVTVEGKSNKPTYGRITAQVFRQNIADYFAKITLTAIPTVTSVHKLLPELATLVGLSFLPEDFEDLPIVWVDNKAKVTFQSKPGSYFWYGSITLDVENGDVDINTVYTYSNYNPTAKTLNKQQWVDNYSALCKRTLDLNKVEVSLPQKPSDLGISSAYNTIVTLTAKPNSGLFGVKYVHFTRINLASFEGQTTAVPDDFTGDLYDALATENIGFRTYLDVNEVERCPLDTSSWPIDVQLKAKPDSYRAVGVANIKVGRYADDTKSITIDFNSNNIAMTATTIADICRARVAKAAQVNLTINVAAGVYLVGAKVTDYALTIPYMSQYANVNVVLNNRGFITGRGAQGSDTGWPNAAGNGLFIDPKFKGSVAINNLGTIAGGGGGGGMSSALNYVGGGGGQPLGAASNTKDSGNFYAGPAATLTAPGASREVWRSDTLYYFGGAGGGLGQPGKIPGQRNGNPPYYAVNQTTAPGDPGKSVVDTANIATWITAGIVMPPVVDQQELLNQWLDVQDARVVSDTTELDLLEADGKFIVQLDSKTNFYTDRDGWTLASKLQCYGQVWGQPVGRVFYSRIPGMLQLGMENENVFYYNYRKNNRVYFEFESTPTRVATTGIYRNFTQGQALTTAQEQVRLKRIVYYDPWRGYVVDVNPYLKTIERFTGFVSDLSKAQDTLDGFKK
Physico‐chemical
properties
protein length:722 AA
molecular weight: 78780,69010 Da
isoelectric point:6,31125
aromaticity:0,10388
hydropathy:-0,22978

Domains

Domains [InterPro]
IPR057701
STR
25–153
IPR057701 DC_0675 IPR007932 DC_0583
IPR057701
STR
181–303
IPR057701 IPR007932
AFO71364.1
1 722
Architecture
STR
STR
RBD
STR 25-153 | STR 158-311 | RBD 312-722
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR5
[NCBI] 		1195085 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFO71364.1 [NCBI]
Genbank nucleotide accession
JX094500.1 [NCBI]
CDS location
range 124069 -> 126237
strand +
CDS
ATGGCATTTGAACCTGATTTAGTAACGGCCGTTATACGGTCGCTAAACCGGAAAAATTTAGTCCCCTCCGCTAGGGCCGCTAATCCGAATGATGTGCGGCTGGTATCGGTTGTTGTCCGTGATGAACGTACACTCGATGTTACGGTGGAAGGCAAGTCAAATAAACCCACTTACGGCCGAATTACGGCACAAGTGTTTCGCCAAAACATTGCCGACTATTTTGCGAAGATAACGCTAACGGCCATCCCGACAGTTACGAGCGTGCATAAACTGCTGCCCGAGTTGGCGACGTTGGTGGGGTTGAGTTTTTTGCCTGAGGACTTTGAAGACTTGCCAATCGTTTGGGTCGACAACAAAGCCAAAGTAACTTTCCAGTCAAAGCCGGGGAGTTATTTTTGGTACGGGTCTATAACACTGGATGTGGAAAACGGCGATGTGGATATCAACACCGTGTACACGTACAGCAACTATAACCCGACGGCAAAAACCCTGAACAAACAGCAGTGGGTTGATAACTACTCCGCGTTATGCAAACGAACACTCGATCTCAACAAAGTGGAAGTGAGTTTACCGCAGAAGCCGTCAGACCTCGGCATCAGTTCGGCGTATAACACCATTGTGACGTTAACTGCGAAACCGAACTCCGGACTGTTTGGTGTAAAATACGTACATTTCACCCGTATCAACCTTGCCAGCTTTGAAGGCCAAACAACCGCGGTTCCTGATGATTTCACAGGTGACCTGTACGATGCATTAGCGACCGAAAATATTGGCTTTCGAACGTATCTTGATGTTAACGAGGTTGAGCGGTGCCCACTGGATACCAGTAGCTGGCCTATTGACGTTCAGTTGAAAGCGAAACCCGACTCTTACAGAGCGGTCGGTGTCGCGAATATCAAAGTCGGGCGTTATGCGGACGATACAAAATCTATCACGATAGACTTCAATAGCAACAACATCGCAATGACGGCAACAACCATTGCTGACATTTGTAGGGCACGGGTAGCTAAGGCCGCGCAAGTTAATTTAACGATTAACGTCGCGGCGGGTGTTTACCTGGTTGGTGCAAAAGTCACCGATTACGCGTTAACTATCCCGTATATGTCCCAGTATGCCAACGTAAATGTTGTGCTCAACAACCGAGGTTTCATTACAGGACGCGGTGCGCAGGGTTCGGATACGGGCTGGCCAAACGCCGCAGGTAACGGATTATTTATCGATCCTAAATTTAAAGGCAGTGTGGCCATCAATAATCTCGGGACAATCGCCGGTGGTGGTGGCGGTGGTGGGATGTCGTCGGCATTGAATTACGTCGGTGGTGGTGGCGGACAACCTTTAGGGGCAGCCAGCAATACTAAAGATTCTGGTAACTTCTATGCTGGTCCTGCGGCGACCCTGACTGCCCCAGGCGCGAGTCGTGAAGTCTGGAGGTCAGATACACTCTACTATTTCGGTGGGGCAGGCGGTGGGCTTGGGCAGCCCGGTAAGATTCCCGGGCAGCGTAACGGAAACCCGCCTTATTACGCCGTGAATCAAACCACAGCGCCCGGCGACCCTGGGAAGTCAGTTGTCGATACGGCAAATATCGCGACTTGGATTACGGCCGGCATCGTTATGCCGCCTGTGGTTGATCAGCAGGAGTTGCTTAATCAGTGGTTGGATGTTCAAGATGCGAGGGTCGTTAGCGACACCACGGAATTGGATTTACTCGAAGCTGACGGTAAATTTATTGTTCAGTTAGATAGTAAAACCAATTTCTATACCGATCGCGACGGTTGGACTTTAGCGTCTAAGTTGCAGTGTTACGGACAAGTGTGGGGTCAACCGGTCGGTAGAGTATTCTACTCGCGTATTCCGGGCATGCTTCAGCTCGGTATGGAAAATGAAAACGTTTTCTATTACAACTACCGAAAAAACAACCGGGTGTATTTCGAGTTTGAATCAACTCCTACACGGGTCGCGACTACGGGCATTTATCGTAACTTCACCCAAGGTCAGGCGTTGACTACTGCGCAAGAGCAAGTGCGGTTAAAACGCATTGTATATTACGACCCATGGCGCGGTTATGTGGTTGATGTAAACCCATATCTGAAAACCATAGAACGCTTCACTGGGTTCGTGTCCGATCTGTCGAAAGCCCAAGATACACTAGACGGGTTTAAAAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
baceb74fe72343d9d1fcd87480566c5616bca9c6b2ebe057b480868a0cfbba0d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7233
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A Novel Bacteriophage Targeting Cronobacter sakazakii Is a Potential Biocontrol Agent in Foods Lee,J.H., Bai,J., Shin,H., Kim,Y., Park,B., Heu,S. and Ryu,S. 2016 26497465 GenBank
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR5 Shin,H., Lee,J.-H., Kim,Y. and Ryu,S. 2012-06 — GenBank