Protein

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Genbank accession
YP_009009373.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MSIVIRRNNGDILWFDAITQYDVNYTATVTKHPVASGGFISDHTTTDNVVLNISGILSDADFNINRPANLGSLPTFQFDTGAHVPVDENGLYKPVSKQYTNNSAVVYPVTITDKSSINKILPEVIAQFTKDTIPDAFVTQQDKDKTAKAVQRELIRMWKEREEFQVLDLLEDFVIDSFGPCVLTNLTFREDESSGEALFPSMTIEQVVFTDLQEITVQVKTSNKGRKTGSITTKTGAAAETAPDHAPRTYTKDSKSSAVKPVGPTTQ
Physico‐chemical
properties
protein length:267 AA
molecular weight: 29425,64270 Da
isoelectric point:5,06216
aromaticity:0,07865
hydropathy:-0,32921

Domains

Domains [InterPro]
IPR048494
ATT
15–217
IPR048494
DC_1100
STR
20–266
DC_1100
YP_009009373.1
1 267
Architecture
ATT
STR
ATT 15-217 | STR 218-266 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPsa374
[NCBI] 		1458843 Uroviricota > Caudoviricetes > Vandenendeviridae > Otagovirus > Otagovirus Psa374
Host Pseudomonas syringae pv. actinidiae ICMP 18800
[NCBI] 		1104681 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009009373.1 [NCBI]
Genbank nucleotide accession
NC_023601.2 [NCBI]
CDS location
range 46747 -> 47550
strand +
CDS
ATGTCTATCGTTATCAGACGTAACAACGGCGACATTCTGTGGTTCGACGCAATCACACAATACGACGTGAACTACACTGCGACAGTAACTAAACACCCCGTCGCCAGCGGCGGGTTTATCTCTGACCACACGACAACCGATAACGTTGTCTTGAACATCAGCGGTATTCTTTCTGACGCAGACTTCAACATCAACAGGCCAGCGAATCTCGGTTCGCTGCCTACCTTCCAATTCGATACTGGTGCTCACGTACCAGTTGACGAGAATGGATTGTACAAACCAGTTAGCAAGCAGTACACAAACAACTCTGCTGTTGTGTATCCAGTAACCATCACTGACAAGAGTTCTATCAACAAGATTCTCCCAGAGGTTATTGCTCAGTTCACAAAGGACACTATCCCTGATGCGTTTGTAACTCAACAGGATAAAGACAAGACAGCTAAGGCTGTACAGCGTGAGTTGATCAGAATGTGGAAAGAGCGTGAAGAGTTCCAAGTGCTTGATTTGTTGGAAGACTTCGTAATCGACTCCTTCGGGCCTTGTGTTCTCACAAACCTAACATTCAGAGAAGATGAGTCATCTGGTGAGGCTTTGTTCCCAAGCATGACAATCGAACAAGTTGTGTTCACTGACTTGCAGGAAATTACTGTGCAGGTGAAGACTTCTAACAAAGGCCGCAAGACTGGTTCGATTACAACGAAAACTGGCGCTGCTGCTGAGACTGCACCAGATCACGCACCAAGAACTTACACCAAAGACTCTAAGAGTTCTGCTGTGAAACCAGTTGGCCCAACAACACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0dc8cce44f777488e5a0f10ddbe735a48e19f65d1b27acd68dadf0f69614a3e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6891
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas phiPsa374-like phages Warring,S., Malone,L.M., Easingwood,R.A., Rigano,L., Frampton,R.A., Lopez Acedo,E., Templeton,M.D., Kleffmann,T., Bostina,M. and Fineran,P.C. 2024-10 — GenBank