Protein

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Genbank accession
YP_009201400.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
Protein sequence
MSGTNIFTHASDAAQYVYLQPFTSPGSAFESGGDVQSIMELFDDSALAPLPSLPYATTTEVGIVEYATQAEANALDDLLTVITPASLDGVDQFVSPATSTQLGNLQELRNTDLTRTYSSSDASRLLSYRRLNEMMTTRNALADDTTNESQGFAEFANLSETLAYNPDRFISPLRTWNLIKAEIPNPWAQATETYTGVLRTVAERDGYKSDGSIAITVKGLNYVKATTSKRGAFKLTQNNYDRNASDSDEYAITPGTIDNLIATPTKHGFFELPSSYVNDSTKATSAALGVDLNTLLGPDGGTITGVLKCDNIYTNIISRQKQSSYGGTYYTTVQEQREMFPNNQLDAKIGLEGRPVGSIFHCTSSVDPNEIFGGVWYKMRAGRTMMGQGIGDDGFTRRYYAAGSFSDIDRVQLYESNLPQHQHAGWGEAYTGSREGCIRYETHRSPYGVTYTCDEYNTVSYWRFGITGSRNNPGSKSTDRDNYMYYNEAVGGNEPHENMMPYYPVYIWRRVK
Physico‐chemical
properties
protein length:512 AA
molecular weight: 56657,84360 Da
isoelectric point:4,92524
aromaticity:0,10938
hydropathy:-0,52344

Domains

Domains [InterPro]
DC_0176
STR
1–469
DC_0176
IPR053827
ATT
355–511
IPR053827
YP_009201400.1
1 512
Architecture
STR
ATT
STR 1-354 | ATT 355-511 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009201400.1
1 512
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,9700
Central domain 306 501 197 0,0569
C-terminal 502 512 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-305
Central
306-501
C-terminal
502-512

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ValKK3
[NCBI] 		1610855 Uroviricota > Caudoviricetes > Pantevenvirales > Schizotequatrovirus > Schizotequatrovirus valkk3
Host Vibrio alginolyticus NBRC 15630 = ATCC 17749
[NCBI] 		1219076 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009201400.1 [NCBI]
Genbank nucleotide accession
NC_028829 [NCBI]
CDS location
range 168535 -> 170073
strand -
CDS
ATGTCAGGAACAAACATATTCACGCACGCTAGTGATGCAGCGCAATATGTTTACCTACAGCCCTTCACATCGCCTGGTTCAGCGTTTGAGTCAGGCGGTGATGTGCAGAGTATAATGGAGCTATTTGACGATAGCGCATTAGCACCACTTCCGTCACTTCCGTATGCGACAACGACTGAGGTTGGTATTGTTGAGTACGCAACTCAAGCAGAAGCTAATGCACTTGACGACTTATTAACTGTAATCACACCAGCGTCACTAGACGGGGTTGACCAGTTCGTGTCTCCAGCAACCAGTACTCAGTTAGGTAATCTACAAGAATTGCGTAATACTGATTTGACAAGAACATATTCGTCATCAGATGCAAGTCGTTTGCTGTCATATCGCCGTCTAAATGAAATGATGACGACTCGTAATGCACTAGCAGATGACACAACAAACGAATCACAAGGTTTTGCTGAGTTTGCAAATCTAAGCGAAACTTTAGCATATAACCCTGACCGATTCATTTCTCCACTTAGAACGTGGAACTTAATTAAAGCAGAGATACCAAACCCTTGGGCTCAAGCGACAGAAACATACACGGGTGTGCTTCGTACTGTAGCAGAACGAGACGGGTATAAATCAGACGGTTCGATTGCAATTACAGTTAAAGGTCTTAATTACGTTAAAGCGACGACATCTAAGCGTGGTGCATTCAAATTAACACAGAACAACTATGACCGCAATGCAAGCGATTCAGATGAATATGCTATAACTCCCGGTACAATCGACAATCTAATAGCGACACCGACTAAACACGGGTTCTTTGAACTACCAAGCTCGTATGTAAACGACTCAACAAAAGCAACAAGTGCTGCACTTGGCGTTGATTTGAATACACTATTAGGCCCAGACGGTGGGACAATTACGGGTGTTTTGAAATGTGACAACATTTACACAAACATCATTTCTCGTCAAAAGCAGAGCAGTTATGGCGGAACATATTACACAACTGTTCAAGAGCAGAGGGAAATGTTCCCGAACAATCAATTAGACGCGAAGATCGGTCTTGAAGGGCGCCCTGTTGGTAGTATTTTTCACTGTACTTCATCAGTTGACCCGAATGAGATTTTCGGTGGCGTATGGTATAAGATGAGAGCAGGTCGAACTATGATGGGGCAGGGTATCGGTGATGATGGGTTCACTCGCAGATATTATGCAGCGGGTTCGTTTAGTGACATCGACCGTGTTCAGTTATACGAGAGTAATTTACCACAACACCAACATGCAGGTTGGGGTGAAGCATATACAGGCTCACGCGAGGGGTGTATTCGCTACGAAACGCATCGAAGTCCGTATGGTGTAACGTATACTTGTGATGAATATAATACTGTCAGTTACTGGAGATTCGGTATAACAGGTTCGCGTAATAATCCCGGTTCGAAATCTACTGATCGTGATAATTACATGTATTACAACGAAGCAGTTGGTGGTAATGAGCCGCATGAGAATATGATGCCATACTACCCAGTTTACATTTGGAGACGAGTTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
17be0678a09cf9170088ed198113896a1f24ef7c70b9be98b1fca2949ee8432d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6206
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50